Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21778 | 3' | -51.7 | NC_004813.1 | + | 45587 | 1.16 | 0.000978 |
Target: 5'- aCCGCGGAUACAGAGCACCGUUUCAGCg -3' miRNA: 3'- -GGCGCCUAUGUCUCGUGGCAAAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 49798 | 0.66 | 0.918112 |
Target: 5'- gCUGCGuGAgcagUACGGGGUcggACCGguaugCAGCg -3' miRNA: 3'- -GGCGC-CU----AUGUCUCG---UGGCaaa--GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 35200 | 0.66 | 0.911763 |
Target: 5'- aUGCGGAUAUccguggcaGGAGCAgCCGgg--AGCg -3' miRNA: 3'- gGCGCCUAUG--------UCUCGU-GGCaaagUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 45368 | 0.66 | 0.911763 |
Target: 5'- aUCGUGGAUaACGGuGC-CCGcUUUgAGCc -3' miRNA: 3'- -GGCGCCUA-UGUCuCGuGGC-AAAgUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 45502 | 0.66 | 0.911763 |
Target: 5'- gCCGCGGGUGgugaAGGGCgugCGcUUCAGUc -3' miRNA: 3'- -GGCGCCUAUg---UCUCGug-GCaAAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 33159 | 0.67 | 0.875876 |
Target: 5'- gCCGCcccuGGccgGCGGugauGCACUGUaucUUCAGCa -3' miRNA: 3'- -GGCG----CCua-UGUCu---CGUGGCA---AAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 46162 | 0.68 | 0.842503 |
Target: 5'- aCGCuGGAggacCAGAGCGCCaccauaCAGCa -3' miRNA: 3'- gGCG-CCUau--GUCUCGUGGcaaa--GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 29123 | 0.68 | 0.842503 |
Target: 5'- gUGCGGAUuucugggagcaGCAGGGCAggCGcgUCAGCc -3' miRNA: 3'- gGCGCCUA-----------UGUCUCGUg-GCaaAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 29990 | 0.69 | 0.775783 |
Target: 5'- -gGCGGAguuugGCAGuGCGcucCCGUUUCucuGGCa -3' miRNA: 3'- ggCGCCUa----UGUCuCGU---GGCAAAG---UCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 22384 | 0.69 | 0.775783 |
Target: 5'- gCCaGUGGcgGCAGGGCAgaaGUggUCAGCg -3' miRNA: 3'- -GG-CGCCuaUGUCUCGUgg-CAa-AGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 46529 | 0.7 | 0.734065 |
Target: 5'- aCGCGGAUaucaGCGGAGCaauuACCGcgaauacCGGCa -3' miRNA: 3'- gGCGCCUA----UGUCUCG----UGGCaaa----GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 30042 | 0.8 | 0.24611 |
Target: 5'- cCUGUGGGgcagugUACGGuGCGCCGggUCAGCg -3' miRNA: 3'- -GGCGCCU------AUGUCuCGUGGCaaAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 31335 | 0.76 | 0.367031 |
Target: 5'- aUGCGGAUGCAGAgGCGgCGUUUggacaguuuguugCAGCa -3' miRNA: 3'- gGCGCCUAUGUCU-CGUgGCAAA-------------GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 28264 | 0.74 | 0.49345 |
Target: 5'- aCUGCGGAUuguGGAuGCACCGgg-CAGCc -3' miRNA: 3'- -GGCGCCUAug-UCU-CGUGGCaaaGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 38772 | 0.73 | 0.557676 |
Target: 5'- gCGCGGGcaaggGCAGccguGUACCGUgcUCAGCa -3' miRNA: 3'- gGCGCCUa----UGUCu---CGUGGCAa-AGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 44240 | 0.71 | 0.657472 |
Target: 5'- -gGUGGAUGCGGAGCAguuUgGUggcCAGCa -3' miRNA: 3'- ggCGCCUAUGUCUCGU---GgCAaa-GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 56418 | 0.7 | 0.701633 |
Target: 5'- gUGCGGGUugAGuguGUACCGUUacgcUgAGCa -3' miRNA: 3'- gGCGCCUAugUCu--CGUGGCAA----AgUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 31698 | 0.7 | 0.734065 |
Target: 5'- gCGUGGccauccGUGCGGAGCGCUGgaUCAacugGCg -3' miRNA: 3'- gGCGCC------UAUGUCUCGUGGCaaAGU----CG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 44354 | 0.72 | 0.61292 |
Target: 5'- aCCGCGGAUAUGGuAGUucACCGUcaUCuGCu -3' miRNA: 3'- -GGCGCCUAUGUC-UCG--UGGCAa-AGuCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 2655 | 0.66 | 0.898225 |
Target: 5'- uCUGCGcGAgcUACAgGAGCGCCGcaa-GGCu -3' miRNA: 3'- -GGCGC-CU--AUGU-CUCGUGGCaaagUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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