miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21779 3' -52.3 NC_004813.1 + 35961 0.66 0.893949
Target:  5'- aUGAGGauacaaauccGCCUCCGUCAUCGucucaguaccucaucAAugGCCCGg -3'
miRNA:   3'- -ACUUC----------UGGAGGUAGUGGC---------------UU--UGGGCg -5'
21779 3' -52.3 NC_004813.1 + 13622 0.66 0.891043
Target:  5'- aGAuGACCaucuaCAUCACUGAGcuaaugacagGCCUGCu -3'
miRNA:   3'- aCUuCUGGag---GUAGUGGCUU----------UGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 44013 0.66 0.891043
Target:  5'- uUGAGGuggUCUCCAaCAgugacugcaccCCGAagguGACCCGCa -3'
miRNA:   3'- -ACUUCu--GGAGGUaGU-----------GGCU----UUGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 40631 0.66 0.883592
Target:  5'- aGAAauCCUCCcgCACCGGAcauaCCGUu -3'
miRNA:   3'- aCUUcuGGAGGuaGUGGCUUug--GGCG- -5'
21779 3' -52.3 NC_004813.1 + 26241 0.66 0.859676
Target:  5'- cGggGGCCgguugcauuaUCCA-CGCCGGAgguGCCgGUg -3'
miRNA:   3'- aCuuCUGG----------AGGUaGUGGCUU---UGGgCG- -5'
21779 3' -52.3 NC_004813.1 + 46977 0.67 0.851207
Target:  5'- cUGccGGCauaUCUAUCACCGAugaaacACCCGg -3'
miRNA:   3'- -ACuuCUGg--AGGUAGUGGCUu-----UGGGCg -5'
21779 3' -52.3 NC_004813.1 + 11862 0.67 0.851207
Target:  5'- uUGAuagucuGGCgUaaCCAUCAUCGAGAUCUGCc -3'
miRNA:   3'- -ACUu-----CUGgA--GGUAGUGGCUUUGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 44804 0.67 0.824423
Target:  5'- cUGGcAGACCUCCAcggaACUGGuggaaGACCCGg -3'
miRNA:   3'- -ACU-UCUGGAGGUag--UGGCU-----UUGGGCg -5'
21779 3' -52.3 NC_004813.1 + 45569 0.67 0.824423
Target:  5'- cUGguGACCaccgCCAUCACCGcggauacaGAGCaCCGUu -3'
miRNA:   3'- -ACuuCUGGa---GGUAGUGGC--------UUUG-GGCG- -5'
21779 3' -52.3 NC_004813.1 + 48525 0.67 0.818834
Target:  5'- gUGGugGGGCCacCCGgaccaaagggagaACCGggGCCCGCg -3'
miRNA:   3'- -ACU--UCUGGa-GGUag-----------UGGCuuUGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 45866 0.68 0.775783
Target:  5'- cUGggGACCggcaGUCAgUGGAguguauccgGCCCGCa -3'
miRNA:   3'- -ACuuCUGGagg-UAGUgGCUU---------UGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 21345 0.68 0.765553
Target:  5'- cGGAGACa--UAUgACCGuccGGACCCGCg -3'
miRNA:   3'- aCUUCUGgagGUAgUGGC---UUUGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 37185 0.69 0.712529
Target:  5'- aGAuaccAGGCCUCU---GCCGAAGgcuCCCGCa -3'
miRNA:   3'- aCU----UCUGGAGGuagUGGCUUU---GGGCG- -5'
21779 3' -52.3 NC_004813.1 + 32753 0.71 0.635202
Target:  5'- cGggGAUCUCaAUCAccCCGGAcgGCCUGCc -3'
miRNA:   3'- aCuuCUGGAGgUAGU--GGCUU--UGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 41193 0.73 0.49345
Target:  5'- gGuuGACUcaUCCGUCAcCCGGAACaCCGCc -3'
miRNA:   3'- aCuuCUGG--AGGUAGU-GGCUUUG-GGCG- -5'
21779 3' -52.3 NC_004813.1 + 52544 0.76 0.366154
Target:  5'- -uGAGcCCUCCAUCACCGcccccgguauCCCGCu -3'
miRNA:   3'- acUUCuGGAGGUAGUGGCuuu-------GGGCG- -5'
21779 3' -52.3 NC_004813.1 + 30266 0.8 0.21557
Target:  5'- gGAGGugUcugCCGUCACCGu-GCCCGCg -3'
miRNA:   3'- aCUUCugGa--GGUAGUGGCuuUGGGCG- -5'
21779 3' -52.3 NC_004813.1 + 46108 1.13 0.001138
Target:  5'- aUGAAGACCUCCAUCACCGAAACCCGCa -3'
miRNA:   3'- -ACUUCUGGAGGUAGUGGCUUUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.