miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21779 5' -51.4 NC_004813.1 + 43220 0.66 0.903297
Target:  5'- uGcCGGUgccuuaCGGUGAAAUGCUGGuuGGCu -3'
miRNA:   3'- uCuGCCA------GUCAUUUUGCGACCucCUG- -5'
21779 5' -51.4 NC_004813.1 + 31193 0.66 0.888832
Target:  5'- --cUGGUCcGUAAuGCGCUGGcGGAa -3'
miRNA:   3'- ucuGCCAGuCAUUuUGCGACCuCCUg -5'
21779 5' -51.4 NC_004813.1 + 18737 0.67 0.856636
Target:  5'- gAGAUGGaUCGGUAuguuGAGCGUgaauugccgGGAGGGa -3'
miRNA:   3'- -UCUGCC-AGUCAU----UUUGCGa--------CCUCCUg -5'
21779 5' -51.4 NC_004813.1 + 38968 0.68 0.795146
Target:  5'- gGGGCuGGUUGGUGGcguacccggacugguGAUGCUGGGGGcuGCa -3'
miRNA:   3'- -UCUG-CCAGUCAUU---------------UUGCGACCUCC--UG- -5'
21779 5' -51.4 NC_004813.1 + 32234 0.69 0.747477
Target:  5'- cAGACGGaugcgCAGgggauacgcaggGAAACGCgccgGGGGGAUa -3'
miRNA:   3'- -UCUGCCa----GUCa-----------UUUUGCGa---CCUCCUG- -5'
21779 5' -51.4 NC_004813.1 + 45466 0.7 0.694964
Target:  5'- uGACGGcCAGUAucuGGCGCaGGugaaauGGGACa -3'
miRNA:   3'- uCUGCCaGUCAUu--UUGCGaCC------UCCUG- -5'
21779 5' -51.4 NC_004813.1 + 22374 0.72 0.604775
Target:  5'- gGGAUGGUCAGccAGugGC-GGcAGGGCa -3'
miRNA:   3'- -UCUGCCAGUCauUUugCGaCC-UCCUG- -5'
21779 5' -51.4 NC_004813.1 + 33066 0.74 0.484078
Target:  5'- gAGaAUGGaCAGUGAgcggcgcaugaaAACGCUGGGGGAUg -3'
miRNA:   3'- -UC-UGCCaGUCAUU------------UUGCGACCUCCUG- -5'
21779 5' -51.4 NC_004813.1 + 47940 0.74 0.47363
Target:  5'- gAGuACGGUCAGUAcAGCGUuauucuguuggUGGAGGGa -3'
miRNA:   3'- -UC-UGCCAGUCAUuUUGCG-----------ACCUCCUg -5'
21779 5' -51.4 NC_004813.1 + 18397 0.74 0.47363
Target:  5'- --cCGG-CAGguucuuGAGCGCUGGGGGGCa -3'
miRNA:   3'- ucuGCCaGUCau----UUUGCGACCUCCUG- -5'
21779 5' -51.4 NC_004813.1 + 46147 1.09 0.002447
Target:  5'- cAGACGGUCAGUAAAACGCUGGAGGACc -3'
miRNA:   3'- -UCUGCCAGUCAUUUUGCGACCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.