Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21780 | 5' | -54.9 | NC_004813.1 | + | 46367 | 1.08 | 0.001115 |
Target: 5'- uAAAUCCGGAGAGCGGCAACAGCACGCc -3' miRNA: 3'- -UUUAGGCCUCUCGCCGUUGUCGUGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 44119 | 0.73 | 0.319404 |
Target: 5'- uGGUCCGG-GAGaCGGCGgACAGCACc- -3' miRNA: 3'- uUUAGGCCuCUC-GCCGU-UGUCGUGcg -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 29981 | 0.72 | 0.368739 |
Target: 5'- ---gCCGGAGGG-GGCGgaguuugGCAGUGCGCu -3' miRNA: 3'- uuuaGGCCUCUCgCCGU-------UGUCGUGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 47902 | 0.69 | 0.527152 |
Target: 5'- gAAAUCCGGAuGaAGCcgGGCGuuACAGCAUGg -3' miRNA: 3'- -UUUAGGCCU-C-UCG--CCGU--UGUCGUGCg -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 4947 | 0.69 | 0.537913 |
Target: 5'- -cAUCgGGAGAGCa--GGCGGUGCGCa -3' miRNA: 3'- uuUAGgCCUCUCGccgUUGUCGUGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 49621 | 0.68 | 0.592685 |
Target: 5'- gGGAUaCCGG-GGGCGGUGAUGGUggGCu -3' miRNA: 3'- -UUUA-GGCCuCUCGCCGUUGUCGugCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 706 | 0.67 | 0.648291 |
Target: 5'- -cGUCaCGGGGAGCuGGUAuc-GCugGCa -3' miRNA: 3'- uuUAG-GCCUCUCG-CCGUuguCGugCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 38595 | 0.67 | 0.659408 |
Target: 5'- ---gCCGGAcaGAuugagaauGUGGCAACAGCcguggGCGCg -3' miRNA: 3'- uuuaGGCCU--CU--------CGCCGUUGUCG-----UGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 54253 | 0.67 | 0.626023 |
Target: 5'- uAAUCCuGGAGuGUaGCAuuguACAGCAUGCc -3' miRNA: 3'- uUUAGG-CCUCuCGcCGU----UGUCGUGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 40875 | 0.67 | 0.626023 |
Target: 5'- ---gCCGGAG-GCGGCAGgCAGUcuugUGCa -3' miRNA: 3'- uuuaGGCCUCuCGCCGUU-GUCGu---GCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 38720 | 0.67 | 0.647179 |
Target: 5'- aAAGUaCCGGGcaaccccGA-CGGCAAcCAGCGCGCc -3' miRNA: 3'- -UUUA-GGCCU-------CUcGCCGUU-GUCGUGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 48736 | 0.66 | 0.702413 |
Target: 5'- aGGGUCCaaagGGAGAuaccgguGCGGCAGgccCGGCAgGCc -3' miRNA: 3'- -UUUAGG----CCUCU-------CGCCGUU---GUCGUgCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 21359 | 0.66 | 0.725171 |
Target: 5'- -cGUCCGGAcccGCGuauuaaGCAGCuGGCGCGCc -3' miRNA: 3'- uuUAGGCCUcu-CGC------CGUUG-UCGUGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 34527 | 0.66 | 0.735869 |
Target: 5'- uGGUCCGGcAGAGCaguGGCcAguGUACGg -3' miRNA: 3'- uUUAGGCC-UCUCG---CCGuUguCGUGCg -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 26218 | 0.66 | 0.725171 |
Target: 5'- ---gCCGGAGGuGcCGGUGGCuuCACGCa -3' miRNA: 3'- uuuaGGCCUCU-C-GCCGUUGucGUGCG- -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 26807 | 0.66 | 0.71438 |
Target: 5'- ---gCCGG-GAGCuGGCAGCAGaCAUa- -3' miRNA: 3'- uuuaGGCCuCUCG-CCGUUGUC-GUGcg -5' |
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21780 | 5' | -54.9 | NC_004813.1 | + | 24665 | 0.66 | 0.692559 |
Target: 5'- --uUCUGGGGuuCGGuCAGCGGCACu- -3' miRNA: 3'- uuuAGGCCUCucGCC-GUUGUCGUGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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