miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21781 3' -57.4 NC_004813.1 + 46481 1.13 0.00051
Target:  5'- aCCCCCCGACGUUUUCCCUGACGCCGGa -3'
miRNA:   3'- -GGGGGGCUGCAAAAGGGACUGCGGCC- -5'
21781 3' -57.4 NC_004813.1 + 32334 0.77 0.162919
Target:  5'- uCCCCCCGGCGcgUUUCCCUG-CGUa-- -3'
miRNA:   3'- -GGGGGGCUGCa-AAAGGGACuGCGgcc -5'
21781 3' -57.4 NC_004813.1 + 44512 0.75 0.239292
Target:  5'- gCCCCCaGACGUUUUCCCauuccguaGCGCgGGu -3'
miRNA:   3'- gGGGGG-CUGCAAAAGGGac------UGCGgCC- -5'
21781 3' -57.4 NC_004813.1 + 48917 0.71 0.367747
Target:  5'- cUCCCCCGGgucgcccuuCGg--UCCCUGAgGuCCGGu -3'
miRNA:   3'- -GGGGGGCU---------GCaaaAGGGACUgC-GGCC- -5'
21781 3' -57.4 NC_004813.1 + 45423 0.7 0.429057
Target:  5'- uCCCUCCGGCaGUgcagCaCCUGACGgUGGa -3'
miRNA:   3'- -GGGGGGCUG-CAaaa-G-GGACUGCgGCC- -5'
21781 3' -57.4 NC_004813.1 + 32805 0.69 0.503948
Target:  5'- aCCCCaCGACGUUUUCaCCgguggauucgcaGACGgUGGa -3'
miRNA:   3'- gGGGG-GCUGCAAAAG-GGa-----------CUGCgGCC- -5'
21781 3' -57.4 NC_004813.1 + 29742 0.69 0.515984
Target:  5'- aUCCCUGAUG---UCCCUGAauCCGGa -3'
miRNA:   3'- gGGGGGCUGCaaaAGGGACUgcGGCC- -5'
21781 3' -57.4 NC_004813.1 + 37952 0.69 0.515984
Target:  5'- gCCagagCCCGGCGcugcUCCCUGGCuGCCGc -3'
miRNA:   3'- -GGg---GGGCUGCaaa-AGGGACUG-CGGCc -5'
21781 3' -57.4 NC_004813.1 + 34705 0.67 0.598644
Target:  5'- gCCCCCCcACGUca--CCguauCGCCGGg -3'
miRNA:   3'- -GGGGGGcUGCAaaagGGacu-GCGGCC- -5'
21781 3' -57.4 NC_004813.1 + 33162 0.67 0.609171
Target:  5'- aUCCCCCaGCGUUUUCa-UG-CGCCGc -3'
miRNA:   3'- -GGGGGGcUGCAAAAGggACuGCGGCc -5'
21781 3' -57.4 NC_004813.1 + 25781 0.67 0.640827
Target:  5'- aCCgCCUGGCGag--UCCUGACGUuauCGGg -3'
miRNA:   3'- -GGgGGGCUGCaaaaGGGACUGCG---GCC- -5'
21781 3' -57.4 NC_004813.1 + 45567 0.66 0.66191
Target:  5'- aCCCgCGGCGUgucccaUUUCaCCUG-CGCCa- -3'
miRNA:   3'- gGGGgGCUGCA------AAAG-GGACuGCGGcc -5'
21781 3' -57.4 NC_004813.1 + 31278 0.66 0.693318
Target:  5'- uCUCCCCGGCGUccaucaCCCaUGAUGUgaaGGg -3'
miRNA:   3'- -GGGGGGCUGCAaaa---GGG-ACUGCGg--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.