Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 46481 | 1.13 | 0.00051 |
Target: 5'- aCCCCCCGACGUUUUCCCUGACGCCGGa -3' miRNA: 3'- -GGGGGGCUGCAAAAGGGACUGCGGCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 45423 | 0.7 | 0.429057 |
Target: 5'- uCCCUCCGGCaGUgcagCaCCUGACGgUGGa -3' miRNA: 3'- -GGGGGGCUG-CAaaa-G-GGACUGCgGCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 32805 | 0.69 | 0.503948 |
Target: 5'- aCCCCaCGACGUUUUCaCCgguggauucgcaGACGgUGGa -3' miRNA: 3'- gGGGG-GCUGCAAAAG-GGa-----------CUGCgGCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 29742 | 0.69 | 0.515984 |
Target: 5'- aUCCCUGAUG---UCCCUGAauCCGGa -3' miRNA: 3'- gGGGGGCUGCaaaAGGGACUgcGGCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 25781 | 0.67 | 0.640827 |
Target: 5'- aCCgCCUGGCGag--UCCUGACGUuauCGGg -3' miRNA: 3'- -GGgGGGCUGCaaaaGGGACUGCG---GCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 31278 | 0.66 | 0.693318 |
Target: 5'- uCUCCCCGGCGUccaucaCCCaUGAUGUgaaGGg -3' miRNA: 3'- -GGGGGGCUGCAaaa---GGG-ACUGCGg--CC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 44512 | 0.75 | 0.239292 |
Target: 5'- gCCCCCaGACGUUUUCCCauuccguaGCGCgGGu -3' miRNA: 3'- gGGGGG-CUGCAAAAGGGac------UGCGgCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 48917 | 0.71 | 0.367747 |
Target: 5'- cUCCCCCGGgucgcccuuCGg--UCCCUGAgGuCCGGu -3' miRNA: 3'- -GGGGGGCU---------GCaaaAGGGACUgC-GGCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 37952 | 0.69 | 0.515984 |
Target: 5'- gCCagagCCCGGCGcugcUCCCUGGCuGCCGc -3' miRNA: 3'- -GGg---GGGCUGCaaa-AGGGACUG-CGGCc -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 34705 | 0.67 | 0.598644 |
Target: 5'- gCCCCCCcACGUca--CCguauCGCCGGg -3' miRNA: 3'- -GGGGGGcUGCAaaagGGacu-GCGGCC- -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 33162 | 0.67 | 0.609171 |
Target: 5'- aUCCCCCaGCGUUUUCa-UG-CGCCGc -3' miRNA: 3'- -GGGGGGcUGCAAAAGggACuGCGGCc -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 45567 | 0.66 | 0.66191 |
Target: 5'- aCCCgCGGCGUgucccaUUUCaCCUG-CGCCa- -3' miRNA: 3'- gGGGgGCUGCA------AAAG-GGACuGCGGcc -5' |
|||||||
21781 | 3' | -57.4 | NC_004813.1 | + | 32334 | 0.77 | 0.162919 |
Target: 5'- uCCCCCCGGCGcgUUUCCCUG-CGUa-- -3' miRNA: 3'- -GGGGGGCUGCa-AAAGGGACuGCGgcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home