Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21781 | 5' | -55.5 | NC_004813.1 | + | 46520 | 1.08 | 0.001175 |
Target: 5'- cAGCCAGGAACGCGGAUAUCAGCGGAGc -3' miRNA: 3'- -UCGGUCCUUGCGCCUAUAGUCGCCUC- -5' |
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21781 | 5' | -55.5 | NC_004813.1 | + | 35222 | 0.7 | 0.466335 |
Target: 5'- cAGCCGGGA--GCGGAUgcaGUCcgguGCGGAa -3' miRNA: 3'- -UCGGUCCUugCGCCUA---UAGu---CGCCUc -5' |
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21781 | 5' | -55.5 | NC_004813.1 | + | 46080 | 0.7 | 0.476413 |
Target: 5'- cAGCCAGcu-UGCGGAUGagaUGGCGGAGa -3' miRNA: 3'- -UCGGUCcuuGCGCCUAUa--GUCGCCUC- -5' |
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21781 | 5' | -55.5 | NC_004813.1 | + | 29384 | 0.68 | 0.560426 |
Target: 5'- gGGUCGGGGAUgacacgGCGGAag-UGGCGGAGu -3' miRNA: 3'- -UCGGUCCUUG------CGCCUauaGUCGCCUC- -5' |
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21781 | 5' | -55.5 | NC_004813.1 | + | 40159 | 0.68 | 0.570173 |
Target: 5'- cGCCAGaaGGAUGCGGAccuucagucucagUAUCAGacCGGGGa -3' miRNA: 3'- uCGGUC--CUUGCGCCU-------------AUAGUC--GCCUC- -5' |
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21781 | 5' | -55.5 | NC_004813.1 | + | 16500 | 0.68 | 0.571259 |
Target: 5'- aGGCCGGaAGCGgGGAUuuucCGGCGGGu -3' miRNA: 3'- -UCGGUCcUUGCgCCUAua--GUCGCCUc -5' |
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21781 | 5' | -55.5 | NC_004813.1 | + | 48149 | 0.67 | 0.647998 |
Target: 5'- uGCCGGaGAgGCGGAgacGUCAGCGaGGa -3' miRNA: 3'- uCGGUCcUUgCGCCUa--UAGUCGCcUC- -5' |
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21781 | 5' | -55.5 | NC_004813.1 | + | 45856 | 0.66 | 0.680861 |
Target: 5'- uGCCcguuaucuGGGGAC-CGGcaGUCAGUGGAGu -3' miRNA: 3'- uCGG--------UCCUUGcGCCuaUAGUCGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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