miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21781 5' -55.5 NC_004813.1 + 46520 1.08 0.001175
Target:  5'- cAGCCAGGAACGCGGAUAUCAGCGGAGc -3'
miRNA:   3'- -UCGGUCCUUGCGCCUAUAGUCGCCUC- -5'
21781 5' -55.5 NC_004813.1 + 35222 0.7 0.466335
Target:  5'- cAGCCGGGA--GCGGAUgcaGUCcgguGCGGAa -3'
miRNA:   3'- -UCGGUCCUugCGCCUA---UAGu---CGCCUc -5'
21781 5' -55.5 NC_004813.1 + 46080 0.7 0.476413
Target:  5'- cAGCCAGcu-UGCGGAUGagaUGGCGGAGa -3'
miRNA:   3'- -UCGGUCcuuGCGCCUAUa--GUCGCCUC- -5'
21781 5' -55.5 NC_004813.1 + 29384 0.68 0.560426
Target:  5'- gGGUCGGGGAUgacacgGCGGAag-UGGCGGAGu -3'
miRNA:   3'- -UCGGUCCUUG------CGCCUauaGUCGCCUC- -5'
21781 5' -55.5 NC_004813.1 + 40159 0.68 0.570173
Target:  5'- cGCCAGaaGGAUGCGGAccuucagucucagUAUCAGacCGGGGa -3'
miRNA:   3'- uCGGUC--CUUGCGCCU-------------AUAGUC--GCCUC- -5'
21781 5' -55.5 NC_004813.1 + 48149 0.67 0.647998
Target:  5'- uGCCGGaGAgGCGGAgacGUCAGCGaGGa -3'
miRNA:   3'- uCGGUCcUUgCGCCUa--UAGUCGCcUC- -5'
21781 5' -55.5 NC_004813.1 + 45856 0.66 0.680861
Target:  5'- uGCCcguuaucuGGGGAC-CGGcaGUCAGUGGAGu -3'
miRNA:   3'- uCGG--------UCCUUGcGCCuaUAGUCGCCUC- -5'
21781 5' -55.5 NC_004813.1 + 16500 0.68 0.571259
Target:  5'- aGGCCGGaAGCGgGGAUuuucCGGCGGGu -3'
miRNA:   3'- -UCGGUCcUUGCgCCUAua--GUCGCCUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.