miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21782 5' -48.8 NC_004813.1 + 32953 0.66 0.968531
Target:  5'- gGcCGGGAcaCGGAACACCgaacAGAcaAUUUCAGc -3'
miRNA:   3'- gC-GCCCU--GCUUUGUGG----UCU--UAAAGUU- -5'
21782 5' -48.8 NC_004813.1 + 4793 0.66 0.961149
Target:  5'- aGCGGGAUGAAaauuACAUgGcGAGUUUUGAc -3'
miRNA:   3'- gCGCCCUGCUU----UGUGgU-CUUAAAGUU- -5'
21782 5' -48.8 NC_004813.1 + 26380 0.67 0.952646
Target:  5'- uGCGGGgauaaucaaaaACGAuacACACCGGggUUUa-- -3'
miRNA:   3'- gCGCCC-----------UGCUu--UGUGGUCuuAAAguu -5'
21782 5' -48.8 NC_004813.1 + 31750 0.67 0.952646
Target:  5'- gGCGGuGGCGGugauCACCGGAGUg---- -3'
miRNA:   3'- gCGCC-CUGCUuu--GUGGUCUUAaaguu -5'
21782 5' -48.8 NC_004813.1 + 44486 0.67 0.939841
Target:  5'- gCGCGGGugGGucagcaugucccacaGGCACCAGGc------ -3'
miRNA:   3'- -GCGCCCugCU---------------UUGUGGUCUuaaaguu -5'
21782 5' -48.8 NC_004813.1 + 27510 0.68 0.906703
Target:  5'- uGCGGcAUGAGACGCCGGGAa----- -3'
miRNA:   3'- gCGCCcUGCUUUGUGGUCUUaaaguu -5'
21782 5' -48.8 NC_004813.1 + 29921 0.69 0.892197
Target:  5'- aGCGGG-UGAu-CACCGGGAUUcgUCAAc -3'
miRNA:   3'- gCGCCCuGCUuuGUGGUCUUAA--AGUU- -5'
21782 5' -48.8 NC_004813.1 + 38822 0.72 0.761762
Target:  5'- cCGCGGGACGGAgaugcagauuGCugCAGAGgcccgUCu- -3'
miRNA:   3'- -GCGCCCUGCUU----------UGugGUCUUaa---AGuu -5'
21782 5' -48.8 NC_004813.1 + 46764 1.06 0.006832
Target:  5'- uCGCGGGACGAAACACCAGAAUUUCAAc -3'
miRNA:   3'- -GCGCCCUGCUUUGUGGUCUUAAAGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.