miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21784 3' -58.2 NC_004813.1 + 5965 0.67 0.506995
Target:  5'- cGCUGGcAucGCCuuuaaaUGCCGCuGGCGAa -3'
miRNA:   3'- -CGGCC-UuuCGGca----ACGGCGuCCGCUg -5'
21784 3' -58.2 NC_004813.1 + 13392 0.68 0.457047
Target:  5'- cGCCGGA----CGUUGCCGCgcuaacAGGCG-Ca -3'
miRNA:   3'- -CGGCCUuucgGCAACGGCG------UCCGCuG- -5'
21784 3' -58.2 NC_004813.1 + 14461 0.72 0.258063
Target:  5'- aGCCaGGggGGCaugggcaccaucaGUUGCUGC-GGCGGCu -3'
miRNA:   3'- -CGG-CCuuUCGg------------CAACGGCGuCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 17123 0.7 0.317448
Target:  5'- cGCCGGAAuucaccgcucGCCuuGUUGaCCGCuGGCGAg -3'
miRNA:   3'- -CGGCCUUu---------CGG--CAAC-GGCGuCCGCUg -5'
21784 3' -58.2 NC_004813.1 + 22471 0.68 0.437816
Target:  5'- aGCUGGGu-GCUGgaguacGCCGCGGGCaACg -3'
miRNA:   3'- -CGGCCUuuCGGCaa----CGGCGUCCGcUG- -5'
21784 3' -58.2 NC_004813.1 + 24054 0.66 0.538056
Target:  5'- cGCUGGAguuuuacgAAGCUGagGCgaaaaaGCAGGCGAa -3'
miRNA:   3'- -CGGCCU--------UUCGGCaaCGg-----CGUCCGCUg -5'
21784 3' -58.2 NC_004813.1 + 24329 0.71 0.280935
Target:  5'- uGUCGGcu-GCCGUucuggcgcugauUGCCGCAGGUG-Cg -3'
miRNA:   3'- -CGGCCuuuCGGCA------------ACGGCGUCCGCuG- -5'
21784 3' -58.2 NC_004813.1 + 26219 0.69 0.380428
Target:  5'- cGCCGGAGGuGCCGguggcuucacgcacgGUaccggaGCAGGUGGCg -3'
miRNA:   3'- -CGGCCUUU-CGGCaa-------------CGg-----CGUCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 28435 0.72 0.264628
Target:  5'- uGCCGGGAucaugaugacggcGCUGUUacugaacugGCgGCAGGCGGCg -3'
miRNA:   3'- -CGGCCUUu------------CGGCAA---------CGgCGUCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 30655 0.69 0.392742
Target:  5'- aGCCGGugaaacAGGCCGguaacgggaaugugGCCGC-GGUGGCu -3'
miRNA:   3'- -CGGCCu-----UUCGGCaa------------CGGCGuCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 35223 0.67 0.486717
Target:  5'- aGCCGGGAgcggaugcAGuCCGgUGCggaaauggCGCAGGCGGa -3'
miRNA:   3'- -CGGCCUU--------UC-GGCaACG--------GCGUCCGCUg -5'
21784 3' -58.2 NC_004813.1 + 35950 0.67 0.486717
Target:  5'- uGCUGGAuGGCag--GCCGUcGGUGGCg -3'
miRNA:   3'- -CGGCCUuUCGgcaaCGGCGuCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 39411 0.68 0.445453
Target:  5'- gGCUGGAAGaccGUCGUgugGCguuaauucgucaGCAGGCGGCa -3'
miRNA:   3'- -CGGCCUUU---CGGCAa--CGg-----------CGUCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 40592 0.67 0.517269
Target:  5'- gGCUGGGcgGAGCgGUgGCCaauGCaaaAGGCGGCg -3'
miRNA:   3'- -CGGCCU--UUCGgCAaCGG---CG---UCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 40722 0.75 0.1721
Target:  5'- gGCCGGAccugAAGCCauuaUGCCucugacGCGGGCGGCg -3'
miRNA:   3'- -CGGCCU----UUCGGca--ACGG------CGUCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 40864 0.68 0.437816
Target:  5'- gGCCaGAuaGGGCCGgagGCgGCAGGCa-- -3'
miRNA:   3'- -CGGcCU--UUCGGCaa-CGgCGUCCGcug -5'
21784 3' -58.2 NC_004813.1 + 42154 0.67 0.527624
Target:  5'- uCCGGcgugcuuaucacGAAGCCGcacgacuCCGCAGGCGcACa -3'
miRNA:   3'- cGGCC------------UUUCGGCaac----GGCGUCCGC-UG- -5'
21784 3' -58.2 NC_004813.1 + 42668 0.67 0.505973
Target:  5'- -aUGGuGAAGCaguucacCGUUGCCGCAguauauGGCGGCa -3'
miRNA:   3'- cgGCC-UUUCG-------GCAACGGCGU------CCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 42939 0.7 0.341018
Target:  5'- gGCCGGAAAGgguggaCUGcagauugUGCUGgGGGCGGCa -3'
miRNA:   3'- -CGGCCUUUC------GGCa------ACGGCgUCCGCUG- -5'
21784 3' -58.2 NC_004813.1 + 45114 0.73 0.229568
Target:  5'- uGCCGGAGA-CCGgUGCCGCcacGGUGAa -3'
miRNA:   3'- -CGGCCUUUcGGCaACGGCGu--CCGCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.