miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
218 3' -64.1 AC_000008.1 + 29476 0.69 0.131824
Target:  5'- aCCgcGGUUGGCGCGUgcaccugguGCCCGacGAGCGCa -3'
miRNA:   3'- -GGa-CCGGUCGCGCGu--------CGGGC--CUCGCG- -5'
218 3' -64.1 AC_000008.1 + 10367 0.69 0.124854
Target:  5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3'
miRNA:   3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5'
218 3' -64.1 AC_000008.1 + 13330 0.69 0.121498
Target:  5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3'
miRNA:   3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5'
218 3' -64.1 AC_000008.1 + 12643 0.69 0.121167
Target:  5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3'
miRNA:   3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5'
218 3' -64.1 AC_000008.1 + 5351 0.7 0.118227
Target:  5'- uCCgGGCU-GCGCGCuGGCCagGGuGCGCu -3'
miRNA:   3'- -GGaCCGGuCGCGCG-UCGGg-CCuCGCG- -5'
218 3' -64.1 AC_000008.1 + 10815 0.71 0.094607
Target:  5'- aCUGGCC-GCGCGCAGCguaagcgguuaggCUGGAaaGCg -3'
miRNA:   3'- gGACCGGuCGCGCGUCG-------------GGCCUcgCG- -5'
218 3' -64.1 AC_000008.1 + 16416 0.71 0.087292
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
218 3' -64.1 AC_000008.1 + 5478 0.72 0.073831
Target:  5'- gCgUGGCCcuuGGCGCGCAGCUUgcccuuggaGGAgGCGCc -3'
miRNA:   3'- -GgACCGG---UCGCGCGUCGGG---------CCU-CGCG- -5'
218 3' -64.1 AC_000008.1 + 11236 0.73 0.065988
Target:  5'- --gGGCCuG-GCGCGGCuaGGAGCGCc -3'
miRNA:   3'- ggaCCGGuCgCGCGUCGggCCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 13201 0.77 0.030977
Target:  5'- gCUGGCCAGCGUGCAccaCCCGGcgcugauaguguuccAGUGCu -3'
miRNA:   3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5'
218 3' -64.1 AC_000008.1 + 30465 0.79 0.022325
Target:  5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3'
miRNA:   3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5'
218 3' -64.1 AC_000008.1 + 10453 0.8 0.017728
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 30531 1.12 0.000043
Target:  5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3'
miRNA:   3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.