miRNA: 3'- cccGgCGUAAUUUuuu--ACGCGACUUU- -5'
miRNA: 3'- ccCGGCGUaa---UUUUUUACGCGacuuu -5'
miRNA: 3'- ccCGGCGU---AAUUUUUUACGCgA-CUUu -5'
miRNA: 3'- -CCCGGCGUAAUUUUUUACGCGACUUU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21806 | 5' | -45.8 | NC_004827.1 | + | 22436 | 0.66 | 0.984577 |
|
Target: 5'- --aCgGCAUUAAAucgcuUGCGCUGAAAc -3' miRNA: 3'- cccGgCGUAAUUUuuu--ACGCGACUUU- -5' |
|||||||
| 21806 | 5' | -45.8 | NC_004827.1 | + | 5989 | 0.66 | 0.982322 |
|
Target: 5'- -cGCCGCGcaaggAGAAGAUGCGCa---- -3' miRNA: 3'- ccCGGCGUaa---UUUUUUACGCGacuuu -5' |
|||||||
| 21806 | 5' | -45.8 | NC_004827.1 | + | 5525 | 0.67 | 0.9672 |
|
Target: 5'- -cGCCGCAggcUUAAAAAGUGCGgUcGGAu -3' miRNA: 3'- ccCGGCGU---AAUUUUUUACGCgA-CUUu -5' |
|||||||
| 21806 | 5' | -45.8 | NC_004827.1 | + | 32860 | 1.1 | 0.005565 |
|
Target: 5'- uGGGCCGCAUUAAAAAAUGCGCUGAAAu -3' miRNA: 3'- -CCCGGCGUAAUUUUUUACGCGACUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home