Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2182 | 3' | -58 | NC_001396.1 | + | 4466 | 0.66 | 0.115553 |
|
Target: 5'- gCUGGUGCGGCgucccagaccuucuGGGCuuggccggaagcgcaCGGCGCUGa -3' miRNA: 3'- gGACCGCGUUGaau-----------UCCG---------------GCCGCGGC- -5' |
|||||||
| 2182 | 3' | -58 | NC_001396.1 | + | 5473 | 0.67 | 0.104555 |
|
Target: 5'- gCUGGCGCGuu----GGCCGGUacCCGg -3' miRNA: 3'- gGACCGCGUugaauuCCGGCCGc-GGC- -5' |
|||||||
| 2182 | 3' | -58 | NC_001396.1 | + | 5285 | 0.69 | 0.068333 |
|
Target: 5'- uCCUGGCGguACacacaGGGGCgcaugaGGCGCUGc -3' miRNA: 3'- -GGACCGCguUGaa---UUCCGg-----CCGCGGC- -5' |
|||||||
| 2182 | 3' | -58 | NC_001396.1 | + | 1949 | 0.73 | 0.028656 |
|
Target: 5'- aUCUGGgGCggUgaaucuGCCGGCGCCGg -3' miRNA: 3'- -GGACCgCGuuGaauuc-CGGCCGCGGC- -5' |
|||||||
| 2182 | 3' | -58 | NC_001396.1 | + | 2001 | 1.11 | 0.000018 |
|
Target: 5'- uCCUGGCGCAACUUAAGGCCGGCGCCGg -3' miRNA: 3'- -GGACCGCGUUGAAUUCCGGCCGCGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home