Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21823 | 3' | -53.7 | NC_004831.2 | + | 38975 | 0.66 | 0.680064 |
Target: 5'- cGCUUGCC--GUUGUGGgUGCGgUACAu -3' miRNA: 3'- -CGGACGGaaUAGUACCgACGUgGUGU- -5' |
|||||||
21823 | 3' | -53.7 | NC_004831.2 | + | 19309 | 1.11 | 0.00059 |
Target: 5'- aGCCUGCCUUAUCAUGGCUGCACCACAa -3' miRNA: 3'- -CGGACGGAAUAGUACCGACGUGGUGU- -5' |
|||||||
21823 | 3' | -53.7 | NC_004831.2 | + | 6642 | 0.68 | 0.588288 |
Target: 5'- gGCUUGCCacUAUCAUGGaaGUGuCCACGa -3' miRNA: 3'- -CGGACGGa-AUAGUACCgaCGU-GGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home