miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21826 3' -52 NC_004831.2 + 40277 0.68 0.668401
Target:  5'- -aCAGAUGCACaAG-CUgUUGCugCUa -3'
miRNA:   3'- ugGUCUACGUGaUCaGAgAACGugGG- -5'
21826 3' -52 NC_004831.2 + 29654 0.66 0.779329
Target:  5'- aAUCAGAUGCguaugugggguGCUGGugguuaccaaUCUCcUGCACCa -3'
miRNA:   3'- -UGGUCUACG-----------UGAUC----------AGAGaACGUGGg -5'
21826 3' -52 NC_004831.2 + 28244 0.69 0.645352
Target:  5'- cACCAagcaggaguuuGAUGCACUGGUUUCUcaauugGCAgCUa -3'
miRNA:   3'- -UGGU-----------CUACGUGAUCAGAGAa-----CGUgGG- -5'
21826 3' -52 NC_004831.2 + 27749 1.11 0.001035
Target:  5'- uACCAGAUGCACUAGUCUCUUGCACCCc -3'
miRNA:   3'- -UGGUCUACGUGAUCAGAGAACGUGGG- -5'
21826 3' -52 NC_004831.2 + 21213 0.68 0.718435
Target:  5'- uACCAGuu-CACUAGUgaaugaaucaccugcCUCUUGCAagcCCCa -3'
miRNA:   3'- -UGGUCuacGUGAUCA---------------GAGAACGU---GGG- -5'
21826 3' -52 NC_004831.2 + 19526 0.66 0.819737
Target:  5'- uACCAGAaaaGCGagGGUCUCUUGCuggugugcgcuuGCUCa -3'
miRNA:   3'- -UGGUCUa--CGUgaUCAGAGAACG------------UGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.