miRNA: 3'- -GUGGUCGUGGUCGGUGAUUCAGCGGU- -5'
miRNA: 3'- guGGUCGUGGUCGGUGAUucaGCGGU- -5'
miRNA: 3'- guGGUCGUGg-UCGGUGAUUCag-CGGU- -5'
miRNA: 3'- gUGGUCGugGUCGG----UGAUu----CAGCGGu -5'
miRNA: 3'- -GugGUCGUGGUCG--GUGau--------UCAGCGGU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21830 | 3' | -56.3 | NC_004831.2 | + | 34271 | 1.09 | 0.000501 |
|
Target: 5'- aCACCAGCACCAGCCACUAAGUCGCCAa -3' miRNA: 3'- -GUGGUCGUGGUCGGUGAUUCAGCGGU- -5' |
|||||||
| 21830 | 3' | -56.3 | NC_004831.2 | + | 31149 | 0.73 | 0.211004 |
|
Target: 5'- -cUCGGCACCAGCCACUGc--UGCCGu -3' miRNA: 3'- guGGUCGUGGUCGGUGAUucaGCGGU- -5' |
|||||||
| 21830 | 3' | -56.3 | NC_004831.2 | + | 38478 | 0.69 | 0.39007 |
|
Target: 5'- -uCCGGCACagGGCCGCUAAGgagGCUAg -3' miRNA: 3'- guGGUCGUGg-UCGGUGAUUCag-CGGU- -5' |
|||||||
| 21830 | 3' | -56.3 | NC_004831.2 | + | 22853 | 0.67 | 0.468334 |
|
Target: 5'- aGCCAGCuuCGGCUucagGCUAucaauGUCGCCc -3' miRNA: 3'- gUGGUCGugGUCGG----UGAUu----CAGCGGu -5' |
|||||||
| 21830 | 3' | -56.3 | NC_004831.2 | + | 38277 | 0.66 | 0.564966 |
|
Target: 5'- gUugCAGUACCAGCauCACcguauuugauAGUUGCCAu -3' miRNA: 3'- -GugGUCGUGGUCG--GUGau--------UCAGCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home