miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21833 5' -50.3 NC_004831.2 + 37850 1.05 0.003367
Target:  5'- cUACCUAGGAAUACCUAUGACCUCCUAu -3'
miRNA:   3'- -AUGGAUCCUUAUGGAUACUGGAGGAU- -5'
21833 5' -50.3 NC_004831.2 + 15752 0.69 0.694383
Target:  5'- gACgUGGGGccaaGUacGCUUAUGACCUCCUu -3'
miRNA:   3'- aUGgAUCCU----UA--UGGAUACUGGAGGAu -5'
21833 5' -50.3 NC_004831.2 + 47 0.67 0.815377
Target:  5'- gGCgCUAGGGcgGCCUGUGGaggCCUGa -3'
miRNA:   3'- aUG-GAUCCUuaUGGAUACUggaGGAU- -5'
21833 5' -50.3 NC_004831.2 + 43599 0.67 0.815377
Target:  5'- gGCgCUAGGGcgGCCUGUGGaggCCUGa -3'
miRNA:   3'- aUG-GAUCCUuaUGGAUACUggaGGAU- -5'
21833 5' -50.3 NC_004831.2 + 27999 0.66 0.853649
Target:  5'- cGCCUAuGGGAUACCUAcccUGaACUUCgUGg -3'
miRNA:   3'- aUGGAU-CCUUAUGGAU---AC-UGGAGgAU- -5'
21833 5' -50.3 NC_004831.2 + 23656 0.66 0.879572
Target:  5'- gACCgAGGAAUaACCUAUGcCCUaUCUAc -3'
miRNA:   3'- aUGGaUCCUUA-UGGAUACuGGA-GGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.