miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21834 3' -53.5 NC_004831.2 + 8863 0.65 0.730311
Target:  5'- cGUUAcGGUGCAgGCCACAAGGCaaucucugagGCUg -3'
miRNA:   3'- -CGGU-CUACGU-UGGUGUUCCGgua-------CGA- -5'
21834 3' -53.5 NC_004831.2 + 30189 0.66 0.71023
Target:  5'- aGCCu-AUGCAGCCuuCAAGGCUG-GCa -3'
miRNA:   3'- -CGGucUACGUUGGu-GUUCCGGUaCGa -5'
21834 3' -53.5 NC_004831.2 + 19239 0.66 0.71023
Target:  5'- uUguGGUGCAGCCAUgauAAGGCaggcuUGCUu -3'
miRNA:   3'- cGguCUACGUUGGUG---UUCCGgu---ACGA- -5'
21834 3' -53.5 NC_004831.2 + 21392 0.66 0.698951
Target:  5'- aGCaCAGGccCAGCaa-GAGGCCAUGCUc -3'
miRNA:   3'- -CG-GUCUacGUUGgugUUCCGGUACGA- -5'
21834 3' -53.5 NC_004831.2 + 28796 0.67 0.653252
Target:  5'- -gCAGAUGCGauauGCCAagcuGGGCCA-GCa -3'
miRNA:   3'- cgGUCUACGU----UGGUgu--UCCGGUaCGa -5'
21834 3' -53.5 NC_004831.2 + 39783 0.67 0.61871
Target:  5'- aGCCAGAUGCua-CACAauuAGGCU-UGUa -3'
miRNA:   3'- -CGGUCUACGuugGUGU---UCCGGuACGa -5'
21834 3' -53.5 NC_004831.2 + 29505 0.68 0.550242
Target:  5'- cGCCAGAUGCAuCCAgCAAuGCU-UGCUu -3'
miRNA:   3'- -CGGUCUACGUuGGU-GUUcCGGuACGA- -5'
21834 3' -53.5 NC_004831.2 + 12980 0.69 0.539026
Target:  5'- uGUCAGAUGCAGCUugauguACAAGGgCAauggaUGCc -3'
miRNA:   3'- -CGGUCUACGUUGG------UGUUCCgGU-----ACGa -5'
21834 3' -53.5 NC_004831.2 + 27622 0.71 0.432332
Target:  5'- cGCCGaGUGCAGuCUACugguGGGCCAagUGCUg -3'
miRNA:   3'- -CGGUcUACGUU-GGUGu---UCCGGU--ACGA- -5'
21834 3' -53.5 NC_004831.2 + 19963 0.71 0.432332
Target:  5'- aGCUAGAgGCuacagGGCgCACAAGGCCAcGCUu -3'
miRNA:   3'- -CGGUCUaCG-----UUG-GUGUUCCGGUaCGA- -5'
21834 3' -53.5 NC_004831.2 + 20844 0.71 0.412482
Target:  5'- uGCCAucaGUGCAGCCcCAcGGGCCAUGgCUc -3'
miRNA:   3'- -CGGUc--UACGUUGGuGU-UCCGGUAC-GA- -5'
21834 3' -53.5 NC_004831.2 + 38160 1.09 0.000867
Target:  5'- uGCCAGAUGCAACCACAAGGCCAUGCUu -3'
miRNA:   3'- -CGGUCUACGUUGGUGUUCCGGUACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.