miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21834 5' -54.6 NC_004831.2 + 2488 0.7 0.39516
Target:  5'- -aAGCAcauuUAGaCACCAuCGGCGCUU-CCUa -3'
miRNA:   3'- cgUCGU----AUC-GUGGU-GCCGCGAAuGGA- -5'
21834 5' -54.6 NC_004831.2 + 31109 0.66 0.662438
Target:  5'- cGCAGCAUuggaAGCcauccuaGCCAgCGGUGaUUACCa -3'
miRNA:   3'- -CGUCGUA----UCG-------UGGU-GCCGCgAAUGGa -5'
21834 5' -54.6 NC_004831.2 + 38125 1.1 0.000575
Target:  5'- aGCAGCAUAGCACCACGGCGCUUACCUg -3'
miRNA:   3'- -CGUCGUAUCGUGGUGCCGCGAAUGGA- -5'
21834 5' -54.6 NC_004831.2 + 5076 0.73 0.28562
Target:  5'- -aAGCAUAGCACUAUaGUGCUgaaUGCCUg -3'
miRNA:   3'- cgUCGUAUCGUGGUGcCGCGA---AUGGA- -5'
21834 5' -54.6 NC_004831.2 + 31629 0.7 0.424015
Target:  5'- aGCAGCAgcAGCuucuGCCACGGCaucuaccuuCUUGCCUu -3'
miRNA:   3'- -CGUCGUa-UCG----UGGUGCCGc--------GAAUGGA- -5'
21834 5' -54.6 NC_004831.2 + 17617 0.69 0.473731
Target:  5'- -aGGCAUcucgauaAGCugCACGGCGUacaacguacUUACCa -3'
miRNA:   3'- cgUCGUA-------UCGugGUGCCGCG---------AAUGGa -5'
21834 5' -54.6 NC_004831.2 + 23131 0.67 0.581845
Target:  5'- cGCAGUacguugaaAUAGCGCCACGGCaucaggauaGCCa -3'
miRNA:   3'- -CGUCG--------UAUCGUGGUGCCGcgaa-----UGGa -5'
21834 5' -54.6 NC_004831.2 + 22734 0.66 0.652223
Target:  5'- cGCAGCcggAGacugACC-CGGUGCUaaUACCUg -3'
miRNA:   3'- -CGUCGua-UCg---UGGuGCCGCGA--AUGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.