miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21835 3' -44.3 NC_004831.2 + 23038 0.66 0.99734
Target:  5'- ----cAUCUCCgAUgugGCUAUCCugauGCCg -3'
miRNA:   3'- uaauuUGGAGGaUAa--UGAUAGGu---CGG- -5'
21835 3' -44.3 NC_004831.2 + 12143 0.67 0.994421
Target:  5'- ---cAGCUUgcaCCUAUuuugUACUcgCCAGCCa -3'
miRNA:   3'- uaauUUGGA---GGAUA----AUGAuaGGUCGG- -5'
21835 3' -44.3 NC_004831.2 + 34983 0.67 0.990855
Target:  5'- uAUUAGGCCUCCUuacauCUuugaAUCC-GCCu -3'
miRNA:   3'- -UAAUUUGGAGGAuaau-GA----UAGGuCGG- -5'
21835 3' -44.3 NC_004831.2 + 27208 0.68 0.989331
Target:  5'- -aUAAGCCUCCcuUGUgGCUAUCaacuGCUg -3'
miRNA:   3'- uaAUUUGGAGG--AUAaUGAUAGgu--CGG- -5'
21835 3' -44.3 NC_004831.2 + 1636 0.69 0.969093
Target:  5'- -gUAAACCUCCUAUguguuaaccuCUAUCUaaucGGCUu -3'
miRNA:   3'- uaAUUUGGAGGAUAau--------GAUAGG----UCGG- -5'
21835 3' -44.3 NC_004831.2 + 37823 0.7 0.965357
Target:  5'- ---uAACUUCCUGUUAUUccUCGGCCu -3'
miRNA:   3'- uaauUUGGAGGAUAAUGAuaGGUCGG- -5'
21835 3' -44.3 NC_004831.2 + 14067 0.76 0.709414
Target:  5'- cAUUAAACCUCCUugAUUAaUAUUCAGCa -3'
miRNA:   3'- -UAAUUUGGAGGA--UAAUgAUAGGUCGg -5'
21835 3' -44.3 NC_004831.2 + 40016 1.11 0.007225
Target:  5'- cAUUAAACCUCCUAUUACUAUCCAGCCc -3'
miRNA:   3'- -UAAUUUGGAGGAUAAUGAUAGGUCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.