miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21838 3' -49.3 NC_004831.2 + 15568 0.66 0.920855
Target:  5'- aUGAUaGUAcCGGGGUGGCAcUUGc-AGCCg -3'
miRNA:   3'- -GCUA-CAU-GUCCCGCUGU-AACuaUCGG- -5'
21838 3' -49.3 NC_004831.2 + 37651 0.67 0.907538
Target:  5'- gCGAUGcagucUAGGGUGuuuggUGGUAGCCg -3'
miRNA:   3'- -GCUACau---GUCCCGCugua-ACUAUCGG- -5'
21838 3' -49.3 NC_004831.2 + 42961 0.69 0.802829
Target:  5'- gCGAUGguUACAGGGCgcacuguGACAUUGcgugGGUCu -3'
miRNA:   3'- -GCUAC--AUGUCCCG-------CUGUAACua--UCGG- -5'
21838 3' -49.3 NC_004831.2 + 27120 0.69 0.833206
Target:  5'- aGAUGaGCAauGGCGucagcaGUUGAUAGCCa -3'
miRNA:   3'- gCUACaUGUc-CCGCug----UAACUAUCGG- -5'
21838 3' -49.3 NC_004831.2 + 22768 1.14 0.001545
Target:  5'- aCGAUGUACAGGGCGACAUUGAUAGCCu -3'
miRNA:   3'- -GCUACAUGUCCCGCUGUAACUAUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.