miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21841 3' -52.1 NC_004902.1 + 34857 0.66 0.797112
Target:  5'- cGGUcCUGuaGACCAaauccugGCAGGCAcGCu -3'
miRNA:   3'- aCCAuGACggCUGGUa------CGUUCGUaUG- -5'
21841 3' -52.1 NC_004902.1 + 1369 0.66 0.797111
Target:  5'- aGG-GCUGUCGACguUGUggGC-UGCc -3'
miRNA:   3'- aCCaUGACGGCUGguACGuuCGuAUG- -5'
21841 3' -52.1 NC_004902.1 + 26913 0.66 0.776287
Target:  5'- aGGUccaAUUGCaGcCCAUGCAGGCcUGCc -3'
miRNA:   3'- aCCA---UGACGgCuGGUACGUUCGuAUG- -5'
21841 3' -52.1 NC_004902.1 + 19388 0.66 0.776287
Target:  5'- uUGuUGCUGCCu-CUggGCAGGUAUACa -3'
miRNA:   3'- -ACcAUGACGGcuGGuaCGUUCGUAUG- -5'
21841 3' -52.1 NC_004902.1 + 28469 0.66 0.776287
Target:  5'- cUGGUcaACUGagGAUUuauuGUGCAAGCGUACc -3'
miRNA:   3'- -ACCA--UGACggCUGG----UACGUUCGUAUG- -5'
21841 3' -52.1 NC_004902.1 + 30126 0.67 0.743835
Target:  5'- ---gGCUGCCu-CCGUGCA-GUAUGCa -3'
miRNA:   3'- accaUGACGGcuGGUACGUuCGUAUG- -5'
21841 3' -52.1 NC_004902.1 + 10023 0.68 0.664329
Target:  5'- uUGGUAgaGCUuACCAUGCA-GCAUcACc -3'
miRNA:   3'- -ACCAUgaCGGcUGGUACGUuCGUA-UG- -5'
21841 3' -52.1 NC_004902.1 + 39844 0.69 0.617866
Target:  5'- gUGGUGCUGCCuacGCCAU-CAcAGcCAUGCa -3'
miRNA:   3'- -ACCAUGACGGc--UGGUAcGU-UC-GUAUG- -5'
21841 3' -52.1 NC_004902.1 + 25341 0.69 0.617866
Target:  5'- cGGUacacuGCUGCCacgcGACCAcacugGCAAGgGUGCu -3'
miRNA:   3'- aCCA-----UGACGG----CUGGUa----CGUUCgUAUG- -5'
21841 3' -52.1 NC_004902.1 + 39439 0.7 0.548785
Target:  5'- aGGUGCUgGCUaGGCCAUGagccAGUAUGCa -3'
miRNA:   3'- aCCAUGA-CGG-CUGGUACgu--UCGUAUG- -5'
21841 3' -52.1 NC_004902.1 + 33391 0.71 0.504062
Target:  5'- aUGGUggcaGCUGCaaaGACCAUGCAGuaaaauCAUGCu -3'
miRNA:   3'- -ACCA----UGACGg--CUGGUACGUUc-----GUAUG- -5'
21841 3' -52.1 NC_004902.1 + 25398 0.71 0.493121
Target:  5'- gGGUGCUGCC--CCA-GC-AGCGUGCu -3'
miRNA:   3'- aCCAUGACGGcuGGUaCGuUCGUAUG- -5'
21841 3' -52.1 NC_004902.1 + 3471 0.72 0.437118
Target:  5'- aGGUGCUGCCGuaaaugcagaugcgAUCAUGCGAcuGgAUGCa -3'
miRNA:   3'- aCCAUGACGGC--------------UGGUACGUU--CgUAUG- -5'
21841 3' -52.1 NC_004902.1 + 5528 0.74 0.344887
Target:  5'- uUGGUAauCUGUCGGCCGaagUGCAGGC-UGCc -3'
miRNA:   3'- -ACCAU--GACGGCUGGU---ACGUUCGuAUG- -5'
21841 3' -52.1 NC_004902.1 + 949 1.09 0.00126
Target:  5'- cUGGUACUGCCGACCAUGCAAGCAUACc -3'
miRNA:   3'- -ACCAUGACGGCUGGUACGUUCGUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.