miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21841 5' -52 NC_004902.1 + 2818 0.66 0.797742
Target:  5'- -aGCCAUUUACgggucuuuuuacaGCGGCCAaCUACAg- -3'
miRNA:   3'- agCGGUAAGUG-------------UGUCGGUcGAUGUag -5'
21841 5' -52 NC_004902.1 + 30045 0.66 0.788477
Target:  5'- gCGCCAcacaaCAUGCAcGCCGGCgaACAUCc -3'
miRNA:   3'- aGCGGUaa---GUGUGU-CGGUCGa-UGUAG- -5'
21841 5' -52 NC_004902.1 + 40115 0.67 0.734597
Target:  5'- cUUGCCug-CG-ACAGCCAGgUUACGUCg -3'
miRNA:   3'- -AGCGGuaaGUgUGUCGGUC-GAUGUAG- -5'
21841 5' -52 NC_004902.1 + 2049 0.67 0.734597
Target:  5'- gCGCCGaUC-CACAGCUuucaaAGCUuauaaACAUCa -3'
miRNA:   3'- aGCGGUaAGuGUGUCGG-----UCGA-----UGUAG- -5'
21841 5' -52 NC_004902.1 + 2024 0.67 0.7223
Target:  5'- cUUGCagauuUUCGC-CAGCCcauaauuAGCUGCGUCa -3'
miRNA:   3'- -AGCGgu---AAGUGuGUCGG-------UCGAUGUAG- -5'
21841 5' -52 NC_004902.1 + 6510 0.67 0.712148
Target:  5'- gUCGUCAUUUACAUAGCCGaUuuccacccgUGCGUCc -3'
miRNA:   3'- -AGCGGUAAGUGUGUCGGUcG---------AUGUAG- -5'
21841 5' -52 NC_004902.1 + 39832 0.68 0.689348
Target:  5'- aCGCCAU---CACAGCCA--UGCAUCu -3'
miRNA:   3'- aGCGGUAaguGUGUCGGUcgAUGUAG- -5'
21841 5' -52 NC_004902.1 + 9984 0.69 0.643114
Target:  5'- aUCGCCua--GCAUGGCUA-CUGCAUCa -3'
miRNA:   3'- -AGCGGuaagUGUGUCGGUcGAUGUAG- -5'
21841 5' -52 NC_004902.1 + 42624 0.69 0.631498
Target:  5'- aCGCCAgcCugACAGCUAGUaACAg- -3'
miRNA:   3'- aGCGGUaaGugUGUCGGUCGaUGUag -5'
21841 5' -52 NC_004902.1 + 33338 0.69 0.631498
Target:  5'- cUGCCAc-CAUACAGUgGcGCUACGUCg -3'
miRNA:   3'- aGCGGUaaGUGUGUCGgU-CGAUGUAG- -5'
21841 5' -52 NC_004902.1 + 43317 0.7 0.562193
Target:  5'- aUCaCCAUUCACACAcCCAGCaACAc- -3'
miRNA:   3'- -AGcGGUAAGUGUGUcGGUCGaUGUag -5'
21841 5' -52 NC_004902.1 + 35346 0.72 0.421807
Target:  5'- aCGCCAggCACGCAGCCAaaCUACu-- -3'
miRNA:   3'- aGCGGUaaGUGUGUCGGUc-GAUGuag -5'
21841 5' -52 NC_004902.1 + 9745 0.73 0.382966
Target:  5'- aUCGCCAagccuugCAUgggauaGCAGCCAGC-ACAUCa -3'
miRNA:   3'- -AGCGGUaa-----GUG------UGUCGGUCGaUGUAG- -5'
21841 5' -52 NC_004902.1 + 13170 0.74 0.346577
Target:  5'- cCGCCAacgACACcGCCGGCUGCAUa -3'
miRNA:   3'- aGCGGUaagUGUGuCGGUCGAUGUAg -5'
21841 5' -52 NC_004902.1 + 910 1.12 0.000872
Target:  5'- aUCGCCAUUCACACAGCCAGCUACAUCa -3'
miRNA:   3'- -AGCGGUAAGUGUGUCGGUCGAUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.