miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21845 5' -57.8 NC_004902.1 + 18485 0.66 0.508278
Target:  5'- --gUCUGUAuuCGCGCUGGa-GGCAcaGCu -3'
miRNA:   3'- ucaAGACGUu-GCGCGACCgcCCGU--CG- -5'
21845 5' -57.8 NC_004902.1 + 39770 0.66 0.497785
Target:  5'- ----aUGCAugGCuGUgaUGGCGuaGGCAGCa -3'
miRNA:   3'- ucaagACGUugCG-CG--ACCGC--CCGUCG- -5'
21845 5' -57.8 NC_004902.1 + 11125 0.66 0.497785
Target:  5'- uGGuUUCUGCuGCGCcuuuGUaGGCGGcGUAGCc -3'
miRNA:   3'- -UC-AAGACGuUGCG----CGaCCGCC-CGUCG- -5'
21845 5' -57.8 NC_004902.1 + 2230 0.66 0.456846
Target:  5'- aAGUa-UGCuACGCGaggcGGCGGGCGGa -3'
miRNA:   3'- -UCAagACGuUGCGCga--CCGCCCGUCg -5'
21845 5' -57.8 NC_004902.1 + 38223 0.67 0.412103
Target:  5'- aGGcUCUGCGGCGCGCUGaacgcacucguugucGCGcacCAGCa -3'
miRNA:   3'- -UCaAGACGUUGCGCGAC---------------CGCcc-GUCG- -5'
21845 5' -57.8 NC_004902.1 + 41295 0.68 0.380827
Target:  5'- --aUgUGCuuCGCGCgaucugGGCuGGCGGCg -3'
miRNA:   3'- ucaAgACGuuGCGCGa-----CCGcCCGUCG- -5'
21845 5' -57.8 NC_004902.1 + 28790 0.69 0.32161
Target:  5'- aAGUUCgccgGaaaGGCGCuCUGGCGGGaaugcCAGCg -3'
miRNA:   3'- -UCAAGa---Cg--UUGCGcGACCGCCC-----GUCG- -5'
21845 5' -57.8 NC_004902.1 + 5921 0.71 0.236682
Target:  5'- cAGUUucCUGCAcguauucaaucaGCGCGCUGuCGGuGCGGCc -3'
miRNA:   3'- -UCAA--GACGU------------UGCGCGACcGCC-CGUCG- -5'
21845 5' -57.8 NC_004902.1 + 36580 0.72 0.201742
Target:  5'- gGGUUCUGCGGCGUauGCccaugGGCcGGCAGg -3'
miRNA:   3'- -UCAAGACGUUGCG--CGa----CCGcCCGUCg -5'
21845 5' -57.8 NC_004902.1 + 37022 0.79 0.061419
Target:  5'- -----aGC-ACGCGCUGGCGGcGCAGCa -3'
miRNA:   3'- ucaagaCGuUGCGCGACCGCC-CGUCG- -5'
21845 5' -57.8 NC_004902.1 + 5623 1.1 0.000293
Target:  5'- aAGUUCUGCAACGCGCUGGCGGGCAGCc -3'
miRNA:   3'- -UCAAGACGUUGCGCGACCGCCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.