miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21847 3' -52.3 NC_004902.1 + 24377 0.66 0.800463
Target:  5'- gGGGaUGAauUCu---UGCCGCUcggcauAGCCGGu -3'
miRNA:   3'- -CCCaACU--AGuguuACGGCGA------UCGGCC- -5'
21847 3' -52.3 NC_004902.1 + 36543 0.67 0.769907
Target:  5'- -uGUUGcaAggGCAGUGCCGCcagcAGCCGGu -3'
miRNA:   3'- ccCAAC--UagUGUUACGGCGa---UCGGCC- -5'
21847 3' -52.3 NC_004902.1 + 5812 0.67 0.759403
Target:  5'- cGGGgUGGUCA--GUGCaccaGCagAGCCGGc -3'
miRNA:   3'- -CCCaACUAGUguUACGg---CGa-UCGGCC- -5'
21847 3' -52.3 NC_004902.1 + 32442 0.69 0.648814
Target:  5'- uGG-UGGUgCACAAUGCCGUcagAGCCa- -3'
miRNA:   3'- cCCaACUA-GUGUUACGGCGa--UCGGcc -5'
21847 3' -52.3 NC_004902.1 + 41549 0.69 0.64768
Target:  5'- uGGUUGucaucuuGUCAgCAGUGCUGCU-GCCGa -3'
miRNA:   3'- cCCAAC-------UAGU-GUUACGGCGAuCGGCc -5'
21847 3' -52.3 NC_004902.1 + 36629 0.7 0.614776
Target:  5'- aGGccu-UCGCGcUGCCGCgggAGCCGGu -3'
miRNA:   3'- cCCaacuAGUGUuACGGCGa--UCGGCC- -5'
21847 3' -52.3 NC_004902.1 + 33499 0.7 0.592147
Target:  5'- uGGGUgacagaUGGUgGCAAggucugggauUGCCaGCUGGCCGa -3'
miRNA:   3'- -CCCA------ACUAgUGUU----------ACGG-CGAUCGGCc -5'
21847 3' -52.3 NC_004902.1 + 6295 1.14 0.00072
Target:  5'- cGGGUUGAUCACAAUGCCGCUAGCCGGa -3'
miRNA:   3'- -CCCAACUAGUGUUACGGCGAUCGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.