miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21847 5' -51.7 NC_004902.1 + 12257 0.66 0.845182
Target:  5'- gGGCgauUGCagUGCAGauacaguCAUUGCAGGAgCGCu -3'
miRNA:   3'- -CCGa--ACGg-ACGUU-------GUAGCGUUCU-GCG- -5'
21847 5' -51.7 NC_004902.1 + 30483 0.66 0.843369
Target:  5'- aGGCaUGCCaGCAACuauaggccuaucuugUGUAAGAgGCa -3'
miRNA:   3'- -CCGaACGGaCGUUGua-------------GCGUUCUgCG- -5'
21847 5' -51.7 NC_004902.1 + 5877 0.66 0.817975
Target:  5'- uGGCUUcGUcaacaacgCUGCAAuCGUUGCugAAGGCGCc -3'
miRNA:   3'- -CCGAA-CG--------GACGUU-GUAGCG--UUCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 13272 0.67 0.798147
Target:  5'- --aUUGCaaGCAACGUUGCcacaggaaGGGGCGCa -3'
miRNA:   3'- ccgAACGgaCGUUGUAGCG--------UUCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 24149 0.67 0.798147
Target:  5'- aGGUgauugucaGCCUGgGcaAUgGCAAGACGCa -3'
miRNA:   3'- -CCGaa------CGGACgUugUAgCGUUCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 42187 0.67 0.787943
Target:  5'- uGGCgggGUCUGUGAaauCGUUGCAcuGGCGCu -3'
miRNA:   3'- -CCGaa-CGGACGUU---GUAGCGUu-CUGCG- -5'
21847 5' -51.7 NC_004902.1 + 28877 0.67 0.777561
Target:  5'- uGGCa-GCUUGUu-CAUCGaGAGGCGCg -3'
miRNA:   3'- -CCGaaCGGACGuuGUAGCgUUCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 27101 0.67 0.756315
Target:  5'- cGGCUUGgCUGCuuuuUCGCAAGuagacuuaccaAUGCc -3'
miRNA:   3'- -CCGAACgGACGuuguAGCGUUC-----------UGCG- -5'
21847 5' -51.7 NC_004902.1 + 33473 0.68 0.723438
Target:  5'- uGGUUUGCCuUGUcc---CGCAGGGCGUa -3'
miRNA:   3'- -CCGAACGG-ACGuuguaGCGUUCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 242 0.68 0.712262
Target:  5'- cGCUUGCUucggGCGcuACAUCGguAGcggGCGCu -3'
miRNA:   3'- cCGAACGGa---CGU--UGUAGCguUC---UGCG- -5'
21847 5' -51.7 NC_004902.1 + 40118 0.7 0.59783
Target:  5'- aGuCUUGCCUGCGACAgccagguuacgUCGgGuagccugaaaGGGCGCa -3'
miRNA:   3'- cC-GAACGGACGUUGU-----------AGCgU----------UCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 25647 0.71 0.529942
Target:  5'- uGGCUacagacagcUGCCaagcagGCAAUuaaGCAAGGCGCa -3'
miRNA:   3'- -CCGA---------ACGGa-----CGUUGuagCGUUCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 12037 0.78 0.223049
Target:  5'- aGGC-UGUCUGCcauuaaGGCAgaggCGCAGGACGCu -3'
miRNA:   3'- -CCGaACGGACG------UUGUa---GCGUUCUGCG- -5'
21847 5' -51.7 NC_004902.1 + 36779 0.79 0.194112
Target:  5'- uGCUUGCCUGCAuCAggGCAGaGCGCa -3'
miRNA:   3'- cCGAACGGACGUuGUagCGUUcUGCG- -5'
21847 5' -51.7 NC_004902.1 + 6258 1.16 0.000563
Target:  5'- aGGCUUGCCUGCAACAUCGCAAGACGCa -3'
miRNA:   3'- -CCGAACGGACGUUGUAGCGUUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.