miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2185 3' -57.4 NC_001396.1 + 771 0.66 0.131516
Target:  5'- gCCUACUuuugcaauuGUGCAGUGggaGUGcGCACGCGg -3'
miRNA:   3'- -GGGUGG---------CGCGUUACag-CGC-CGUGUGC- -5'
2185 3' -57.4 NC_001396.1 + 2645 0.67 0.123411
Target:  5'- gCCCACgGCGUcGUGcCG-GGCACGg- -3'
miRNA:   3'- -GGGUGgCGCGuUACaGCgCCGUGUgc -5'
2185 3' -57.4 NC_001396.1 + 5310 0.71 0.057233
Target:  5'- gCCGCCGCGguG-GUCGCgcugcugguccuggcGGUACACa -3'
miRNA:   3'- gGGUGGCGCguUaCAGCG---------------CCGUGUGc -5'
2185 3' -57.4 NC_001396.1 + 3433 1.1 2.8e-05
Target:  5'- cCCCACCGCGCAAUGUCGCGGCACACGu -3'
miRNA:   3'- -GGGUGGCGCGUUACAGCGCCGUGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.