miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21851 3' -56.5 NC_004902.1 + 3605 0.66 0.56903
Target:  5'- ----aUGGCAUUGCUGCAaUCgCCUGCGa -3'
miRNA:   3'- cucuaACCGUAGUGGCGU-GG-GGACGU- -5'
21851 3' -56.5 NC_004902.1 + 24174 0.66 0.535998
Target:  5'- aGGGUUGGCuugaucuuuaugaucUCGCCGUuugugccauugucGCCCUUGCGc -3'
miRNA:   3'- cUCUAACCGu--------------AGUGGCG-------------UGGGGACGU- -5'
21851 3' -56.5 NC_004902.1 + 37109 0.67 0.4722
Target:  5'- cGGGAgUGGU-UUACCGUACUCUUGCu -3'
miRNA:   3'- -CUCUaACCGuAGUGGCGUGGGGACGu -5'
21851 3' -56.5 NC_004902.1 + 24406 0.67 0.451786
Target:  5'- -----cGGUAUCGCUGUAUCCCUGg- -3'
miRNA:   3'- cucuaaCCGUAGUGGCGUGGGGACgu -5'
21851 3' -56.5 NC_004902.1 + 26005 0.69 0.357633
Target:  5'- uGAGAUUGGCGcUGCCGCaACCaaucuugugCCUGCc -3'
miRNA:   3'- -CUCUAACCGUaGUGGCG-UGG---------GGACGu -5'
21851 3' -56.5 NC_004902.1 + 36775 0.7 0.32402
Target:  5'- -uGAUgcUGGCGUgGCUGCugCCCUGg- -3'
miRNA:   3'- cuCUA--ACCGUAgUGGCGugGGGACgu -5'
21851 3' -56.5 NC_004902.1 + 25424 0.71 0.284658
Target:  5'- uGGGAUcugcuacaucgccUGGCAgauacacucgaaUCugCGCAgCCCCUGCGa -3'
miRNA:   3'- -CUCUA-------------ACCGU------------AGugGCGU-GGGGACGU- -5'
21851 3' -56.5 NC_004902.1 + 7008 1.08 0.000526
Target:  5'- uGAGAUUGGCAUCACCGCACCCCUGCAa -3'
miRNA:   3'- -CUCUAACCGUAGUGGCGUGGGGACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.