miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21852 3' -57.2 NC_004902.1 + 2679 0.66 0.526133
Target:  5'- gGUgCGaGGUCGCAGuAGuuggcaucgacggcgGCGGCCUGGa -3'
miRNA:   3'- aUAgGC-CCGGCGUC-UU---------------UGCCGGAUCg -5'
21852 3' -57.2 NC_004902.1 + 26218 0.66 0.499613
Target:  5'- gGUUCGaGCCGguGAucauaaaccaaucAACGGCCU-GCu -3'
miRNA:   3'- aUAGGCcCGGCguCU-------------UUGCCGGAuCG- -5'
21852 3' -57.2 NC_004902.1 + 11237 0.67 0.479862
Target:  5'- --aCUGGGCaGCAGAuggacAUGGCC-GGCg -3'
miRNA:   3'- auaGGCCCGgCGUCUu----UGCCGGaUCG- -5'
21852 3' -57.2 NC_004902.1 + 29963 0.67 0.449481
Target:  5'- --aCCGGGCUGCGguGAAGUGGCCg--- -3'
miRNA:   3'- auaGGCCCGGCGU--CUUUGCCGGaucg -5'
21852 3' -57.2 NC_004902.1 + 33686 0.67 0.439591
Target:  5'- cAUCUGGGCUGUAGGcuuUGGCagaucuUGGCa -3'
miRNA:   3'- aUAGGCCCGGCGUCUuu-GCCGg-----AUCG- -5'
21852 3' -57.2 NC_004902.1 + 25282 0.69 0.356568
Target:  5'- aUGUauaCGGGCCaugauguccugGCGGAGuuuGCGGCC-AGCa -3'
miRNA:   3'- -AUAg--GCCCGG-----------CGUCUU---UGCCGGaUCG- -5'
21852 3' -57.2 NC_004902.1 + 21276 0.7 0.299269
Target:  5'- aUcgCCGcaaggcaGGCCGCAGAcGCGGCaCUacaGGCg -3'
miRNA:   3'- -AuaGGC-------CCGGCGUCUuUGCCG-GA---UCG- -5'
21852 3' -57.2 NC_004902.1 + 31323 0.75 0.14983
Target:  5'- aUAUCCGGGCCG-----ACGGCCuUAGCc -3'
miRNA:   3'- -AUAGGCCCGGCgucuuUGCCGG-AUCG- -5'
21852 3' -57.2 NC_004902.1 + 7750 1.09 0.000392
Target:  5'- gUAUCCGGGCCGCAGAAACGGCCUAGCu -3'
miRNA:   3'- -AUAGGCCCGGCGUCUUUGCCGGAUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.