miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21855 3' -56.2 NC_004902.1 + 231 0.66 0.62054
Target:  5'- -gGCGCU-ACAUCGGUa--GCGGGCGc -3'
miRNA:   3'- ugCGUGGuUGUAGCCAgucCGCCUGU- -5'
21855 3' -56.2 NC_004902.1 + 2667 0.66 0.576185
Target:  5'- cCGCGCCuGCGaaUCGGUCGuuGCGGAg- -3'
miRNA:   3'- uGCGUGGuUGU--AGCCAGUc-CGCCUgu -5'
21855 3' -56.2 NC_004902.1 + 14563 0.67 0.500663
Target:  5'- cCGCAuCCAcuaACAUUGGaCGGGCaGACAc -3'
miRNA:   3'- uGCGU-GGU---UGUAGCCaGUCCGcCUGU- -5'
21855 3' -56.2 NC_004902.1 + 2520 0.68 0.479862
Target:  5'- aGCGaGCCAaaaACAUCGGU--GGCGGugAg -3'
miRNA:   3'- -UGCgUGGU---UGUAGCCAguCCGCCugU- -5'
21855 3' -56.2 NC_004902.1 + 10854 0.68 0.473704
Target:  5'- aGCaCACCGGCAcagauacaggacuuuUUGGUCcagguccaAGGCGGGCAa -3'
miRNA:   3'- -UGcGUGGUUGU---------------AGCCAG--------UCCGCCUGU- -5'
21855 3' -56.2 NC_004902.1 + 3454 0.7 0.374041
Target:  5'- cCGcCGCCGAUAUCaacgGGaUCAGGCGGAaCAa -3'
miRNA:   3'- uGC-GUGGUUGUAG----CC-AGUCCGCCU-GU- -5'
21855 3' -56.2 NC_004902.1 + 38255 0.71 0.331451
Target:  5'- cGCGCACCAGCAccUCGccagcGGCGGGCc -3'
miRNA:   3'- -UGCGUGGUUGU--AGCcagu-CCGCCUGu -5'
21855 3' -56.2 NC_004902.1 + 8473 1.08 0.000676
Target:  5'- aACGCACCAACAUCGGUCAGGCGGACAa -3'
miRNA:   3'- -UGCGUGGUUGUAGCCAGUCCGCCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.