miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21856 5' -52.3 NC_004902.1 + 36680 0.66 0.812914
Target:  5'- cGAagGCCUacaaacaaGGCGGCGUggcagUAGCUACUg -3'
miRNA:   3'- aCUa-UGGG--------UCGCCGCAa----GUUGAUGGu -5'
21856 5' -52.3 NC_004902.1 + 43840 0.66 0.792926
Target:  5'- -cGUACgCAGCGGUGcgCG-CUGCCu -3'
miRNA:   3'- acUAUGgGUCGCCGCaaGUuGAUGGu -5'
21856 5' -52.3 NC_004902.1 + 12993 0.66 0.782651
Target:  5'- ---gACCCAGCaGGUGUUguGC-ACCGu -3'
miRNA:   3'- acuaUGGGUCG-CCGCAAguUGaUGGU- -5'
21856 5' -52.3 NC_004902.1 + 7060 0.66 0.782651
Target:  5'- cGGUGCCauccuGGCGGCGUUgCAAUacaGCCc -3'
miRNA:   3'- aCUAUGGg----UCGCCGCAA-GUUGa--UGGu -5'
21856 5' -52.3 NC_004902.1 + 14056 0.67 0.750856
Target:  5'- uUGAUGCUCAGaCaGUGacaUUAACUGCCAg -3'
miRNA:   3'- -ACUAUGGGUC-GcCGCa--AGUUGAUGGU- -5'
21856 5' -52.3 NC_004902.1 + 6250 0.67 0.750856
Target:  5'- cGAUugACUgGGCGGCGaUUgAGCUcGCCAa -3'
miRNA:   3'- aCUA--UGGgUCGCCGC-AAgUUGA-UGGU- -5'
21856 5' -52.3 NC_004902.1 + 41709 0.69 0.626791
Target:  5'- ---cGCUCuaAGCGGCGUUCcuaggcaucaccAGCUACCAc -3'
miRNA:   3'- acuaUGGG--UCGCCGCAAG------------UUGAUGGU- -5'
21856 5' -52.3 NC_004902.1 + 16530 0.69 0.615306
Target:  5'- gGAUACCUGGCGaGCua--AGCUACCGu -3'
miRNA:   3'- aCUAUGGGUCGC-CGcaagUUGAUGGU- -5'
21856 5' -52.3 NC_004902.1 + 561 0.71 0.492124
Target:  5'- -cAUACCCAGCGGCug-CAAUUGCg- -3'
miRNA:   3'- acUAUGGGUCGCCGcaaGUUGAUGgu -5'
21856 5' -52.3 NC_004902.1 + 9525 0.74 0.363269
Target:  5'- aGAUACCCAGCGGCuGUggGAUUcuacaggcccaACCAa -3'
miRNA:   3'- aCUAUGGGUCGCCG-CAagUUGA-----------UGGU- -5'
21856 5' -52.3 NC_004902.1 + 9561 1.09 0.001352
Target:  5'- aUGAUACCCAGCGGCGUUCAACUACCAu -3'
miRNA:   3'- -ACUAUGGGUCGCCGCAAGUUGAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.