miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21857 5' -57.3 NC_004902.1 + 21485 0.66 0.408224
Target:  5'- uGGcGUCAGCAugucUGGUAGCugggGGCGGAAu -3'
miRNA:   3'- uUC-CGGUCGUu---ACCGUCG----UCGCCUUu -5'
21857 5' -57.3 NC_004902.1 + 14864 0.66 0.408224
Target:  5'- cAGGCgCAuaugguGCAGUGGCGGCAacuGCGGu-- -3'
miRNA:   3'- uUCCG-GU------CGUUACCGUCGU---CGCCuuu -5'
21857 5' -57.3 NC_004902.1 + 20292 0.68 0.34309
Target:  5'- uGGGCCuauauuaAGUggUuGCGGCGGCGGAu- -3'
miRNA:   3'- uUCCGG-------UCGuuAcCGUCGUCGCCUuu -5'
21857 5' -57.3 NC_004902.1 + 3879 0.68 0.335387
Target:  5'- -uGGCCAuCAGUccGGCGGUAGCGGuAAg -3'
miRNA:   3'- uuCCGGUcGUUA--CCGUCGUCGCCuUU- -5'
21857 5' -57.3 NC_004902.1 + 31768 0.68 0.310632
Target:  5'- gAAGG-CAGCAAUGGCacuuauugugcAGCAGUGGu-- -3'
miRNA:   3'- -UUCCgGUCGUUACCG-----------UCGUCGCCuuu -5'
21857 5' -57.3 NC_004902.1 + 12203 0.69 0.279824
Target:  5'- cAGGCCGGCAua-GUAGUucuuGGCGGAAAc -3'
miRNA:   3'- uUCCGGUCGUuacCGUCG----UCGCCUUU- -5'
21857 5' -57.3 NC_004902.1 + 38872 0.71 0.211717
Target:  5'- uAAGGCCAuacuucgcaagacgGCAAagacuUGGCAGCacuacAGCGGAGAc -3'
miRNA:   3'- -UUCCGGU--------------CGUU-----ACCGUCG-----UCGCCUUU- -5'
21857 5' -57.3 NC_004902.1 + 11092 1.03 0.000717
Target:  5'- cAAGGCCAGCAAUGGCAGCAGCGGAAAc -3'
miRNA:   3'- -UUCCGGUCGUUACCGUCGUCGCCUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.