miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21858 5' -57.4 NC_004902.1 + 36705 0.66 0.517153
Target:  5'- gUCAGCAccggcucccGCGGCAGCGC-GaaGGCCUa -3'
miRNA:   3'- gAGUUGU---------CGUCGUUGCGgCggUCGGA- -5'
21858 5' -57.4 NC_004902.1 + 36700 0.66 0.517153
Target:  5'- -cCAACgcccagGGCAGCAGC-CaCGCCAGCa- -3'
miRNA:   3'- gaGUUG------UCGUCGUUGcG-GCGGUCGga -5'
21858 5' -57.4 NC_004902.1 + 24365 0.66 0.506492
Target:  5'- gCUCAGC-GCGGCGGggaugaauucuUGCCGCUcggcauAGCCg -3'
miRNA:   3'- -GAGUUGuCGUCGUU-----------GCGGCGG------UCGGa -5'
21858 5' -57.4 NC_004902.1 + 24112 0.66 0.506492
Target:  5'- uCUCGGCAGCGGCGuucCGCaCaCCgAGUCUg -3'
miRNA:   3'- -GAGUUGUCGUCGUu--GCG-GcGG-UCGGA- -5'
21858 5' -57.4 NC_004902.1 + 18243 0.66 0.495925
Target:  5'- gCUCAGCAGC-GCAACacuuugGCUGUaCAGCUg -3'
miRNA:   3'- -GAGUUGUCGuCGUUG------CGGCG-GUCGGa -5'
21858 5' -57.4 NC_004902.1 + 27866 0.66 0.495925
Target:  5'- -gUAACAGCGcCAGCGcCCGCCAuGCa- -3'
miRNA:   3'- gaGUUGUCGUcGUUGC-GGCGGU-CGga -5'
21858 5' -57.4 NC_004902.1 + 6301 0.66 0.48546
Target:  5'- gUCAAUcgGGUugaucaCAAUGCCGCUAGCCg -3'
miRNA:   3'- gAGUUG--UCGuc----GUUGCGGCGGUCGGa -5'
21858 5' -57.4 NC_004902.1 + 12026 0.66 0.475101
Target:  5'- --uGGguGCAGCAAgGCUGUCuGCCa -3'
miRNA:   3'- gagUUguCGUCGUUgCGGCGGuCGGa -5'
21858 5' -57.4 NC_004902.1 + 6961 0.67 0.444712
Target:  5'- uCUCAGCAGguaagcuaaaCAcuaggcuguauuGCAACGCCGCCAGg-- -3'
miRNA:   3'- -GAGUUGUC----------GU------------CGUUGCGGCGGUCgga -5'
21858 5' -57.4 NC_004902.1 + 11352 0.67 0.443718
Target:  5'- uUCAACAGCcgugccgguAGCGaccgaccauuuuaGCGCagccuCGCCGGCCa -3'
miRNA:   3'- gAGUUGUCG---------UCGU-------------UGCG-----GCGGUCGGa -5'
21858 5' -57.4 NC_004902.1 + 36547 0.67 0.425069
Target:  5'- -gCAAgGGCAGU---GCCGCCAGCa- -3'
miRNA:   3'- gaGUUgUCGUCGuugCGGCGGUCGga -5'
21858 5' -57.4 NC_004902.1 + 41210 0.67 0.405953
Target:  5'- uUUAACA--AGUGcCGCCGCCAGCCc -3'
miRNA:   3'- gAGUUGUcgUCGUuGCGGCGGUCGGa -5'
21858 5' -57.4 NC_004902.1 + 43647 0.68 0.3966
Target:  5'- cCUUAGCAGCAGCucuUGCgGCagCAGCUUc -3'
miRNA:   3'- -GAGUUGUCGUCGuu-GCGgCG--GUCGGA- -5'
21858 5' -57.4 NC_004902.1 + 36594 0.68 0.369387
Target:  5'- gUCGcCAGUAGCuacugccACGCCGCCuuguuuguaGGCCUu -3'
miRNA:   3'- gAGUuGUCGUCGu------UGCGGCGG---------UCGGA- -5'
21858 5' -57.4 NC_004902.1 + 18672 0.68 0.369387
Target:  5'- aCUCAGCAGCuccaAACGCUGUCAacgGCCc -3'
miRNA:   3'- -GAGUUGUCGucg-UUGCGGCGGU---CGGa -5'
21858 5' -57.4 NC_004902.1 + 15341 0.69 0.343481
Target:  5'- cCUCGuccuGUAa-GGCGCCGCCAGCCUg -3'
miRNA:   3'- -GAGUugu-CGUcgUUGCGGCGGUCGGA- -5'
21858 5' -57.4 NC_004902.1 + 38392 0.69 0.343481
Target:  5'- -aCAACAGCAGC-AUGCC-CCuGCUUg -3'
miRNA:   3'- gaGUUGUCGUCGuUGCGGcGGuCGGA- -5'
21858 5' -57.4 NC_004902.1 + 24320 0.71 0.233934
Target:  5'- aCUCAggcugGCAGCAaggcGCAGCguGCCGCCAagGCCg -3'
miRNA:   3'- -GAGU-----UGUCGU----CGUUG--CGGCGGU--CGGa -5'
21858 5' -57.4 NC_004902.1 + 24400 0.76 0.107372
Target:  5'- cCUUGGCGGCAcGCuGCGCCuugcuGCCAGCCUg -3'
miRNA:   3'- -GAGUUGUCGU-CGuUGCGG-----CGGUCGGA- -5'
21858 5' -57.4 NC_004902.1 + 13121 1.07 0.000518
Target:  5'- cCUCAACAGCAGCAACGCCGCCAGCCUu -3'
miRNA:   3'- -GAGUUGUCGUCGUUGCGGCGGUCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.