Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2186 | 5' | -56.2 | NC_001396.1 | + | 3478 | 0.66 | 0.166368 |
|
Target: 5'- --aGGAuucccCGGUUGCagaaGCCAcGCAGCCUa -3' miRNA: 3'- gcaCCUu----GCCAACG----CGGU-UGUCGGGg -5' |
|||||||
| 2186 | 5' | -56.2 | NC_001396.1 | + | 1951 | 0.66 | 0.156184 |
|
Target: 5'- -cUGGGGCGGUgaaucugccgGCGCCGGCcuuaaguuGCgCCa -3' miRNA: 3'- gcACCUUGCCAa---------CGCGGUUGu-------CGgGG- -5' |
|||||||
| 2186 | 5' | -56.2 | NC_001396.1 | + | 4004 | 0.67 | 0.128937 |
|
Target: 5'- -cUGGAGCGGcacagaGCaUCAGCAGCaCCCa -3' miRNA: 3'- gcACCUUGCCaa----CGcGGUUGUCG-GGG- -5' |
|||||||
| 2186 | 5' | -56.2 | NC_001396.1 | + | 5906 | 0.69 | 0.095901 |
|
Target: 5'- -aUGG-AUGaUUGCGCCAgcucgagugcaggGCGGCCCCc -3' miRNA: 3'- gcACCuUGCcAACGCGGU-------------UGUCGGGG- -5' |
|||||||
| 2186 | 5' | -56.2 | NC_001396.1 | + | 3885 | 1.11 | 0.000029 |
|
Target: 5'- gCGUGGAACGGUUGCGCCAACAGCCCCc -3' miRNA: 3'- -GCACCUUGCCAACGCGGUUGUCGGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home