miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21862 5' -58.4 NC_004902.1 + 35631 0.66 0.493031
Target:  5'- aUCCgUGCUggUGCACUCUGgCAGCUcuGCc -3'
miRNA:   3'- -AGG-GCGG--ACGUGAGGCgGUUGGuuCG- -5'
21862 5' -58.4 NC_004902.1 + 3027 0.66 0.482784
Target:  5'- uUCCUGCCUGguCaaCGCCAAUu--GCg -3'
miRNA:   3'- -AGGGCGGACguGagGCGGUUGguuCG- -5'
21862 5' -58.4 NC_004902.1 + 33946 0.66 0.482784
Target:  5'- aCCCGCCUugGCugUCUuGCUGuCCuuGAGCa -3'
miRNA:   3'- aGGGCGGA--CGugAGG-CGGUuGG--UUCG- -5'
21862 5' -58.4 NC_004902.1 + 27872 0.66 0.482784
Target:  5'- --gCGCCaGCGC-CCGCCAugCAAccuuuGCa -3'
miRNA:   3'- aggGCGGaCGUGaGGCGGUugGUU-----CG- -5'
21862 5' -58.4 NC_004902.1 + 4309 0.66 0.481765
Target:  5'- -gCCGCauugagcaaagcaUUGCGCUgaaucugcugUCGCCAGCUGAGCg -3'
miRNA:   3'- agGGCG-------------GACGUGA----------GGCGGUUGGUUCG- -5'
21862 5' -58.4 NC_004902.1 + 15343 0.66 0.462606
Target:  5'- gUCCuCGuCCUGUAaggcgCCGCCAGCCu--- -3'
miRNA:   3'- -AGG-GC-GGACGUga---GGCGGUUGGuucg -5'
21862 5' -58.4 NC_004902.1 + 952 0.67 0.433195
Target:  5'- ---gGCCUGgUACUgCCGaCCAugCAAGCa -3'
miRNA:   3'- agggCGGAC-GUGA-GGC-GGUugGUUCG- -5'
21862 5' -58.4 NC_004902.1 + 37081 0.67 0.404902
Target:  5'- -gCCGCCaGCGCgugCUGUgGAUCGGGCc -3'
miRNA:   3'- agGGCGGaCGUGa--GGCGgUUGGUUCG- -5'
21862 5' -58.4 NC_004902.1 + 27620 0.67 0.404902
Target:  5'- -gCCGCCUGCGCcagUGCCAAUCAu-- -3'
miRNA:   3'- agGGCGGACGUGag-GCGGUUGGUucg -5'
21862 5' -58.4 NC_004902.1 + 35096 0.67 0.395733
Target:  5'- cUCCGCCUGgGuCUCCagcGCCAGC--AGCa -3'
miRNA:   3'- aGGGCGGACgU-GAGG---CGGUUGguUCG- -5'
21862 5' -58.4 NC_004902.1 + 19242 0.67 0.386699
Target:  5'- gCCUGCaCUGUAUUCCaGCCuugcGCCuccAGCa -3'
miRNA:   3'- aGGGCG-GACGUGAGG-CGGu---UGGu--UCG- -5'
21862 5' -58.4 NC_004902.1 + 33398 0.67 0.386699
Target:  5'- cCCUGCaacagGUACUCgGCCAGCU-GGCa -3'
miRNA:   3'- aGGGCGga---CGUGAGgCGGUUGGuUCG- -5'
21862 5' -58.4 NC_004902.1 + 38407 0.67 0.386699
Target:  5'- cCCUGCUUGgGCUCCuCUgcuCCGGGCa -3'
miRNA:   3'- aGGGCGGACgUGAGGcGGuu-GGUUCG- -5'
21862 5' -58.4 NC_004902.1 + 36863 0.67 0.385803
Target:  5'- aUCUgGUgcaugagCUGCGCUCUGCCcugAugCAGGCa -3'
miRNA:   3'- -AGGgCG-------GACGUGAGGCGG---UugGUUCG- -5'
21862 5' -58.4 NC_004902.1 + 28707 0.71 0.241948
Target:  5'- cCCCGCUgGCAUUcCCGCCAgagcGCCuuuccGGCg -3'
miRNA:   3'- aGGGCGGaCGUGA-GGCGGU----UGGu----UCG- -5'
21862 5' -58.4 NC_004902.1 + 30666 0.72 0.21222
Target:  5'- gUCCuUGCCUGCuGCgCCcuuGUCAACCAGGCa -3'
miRNA:   3'- -AGG-GCGGACG-UGaGG---CGGUUGGUUCG- -5'
21862 5' -58.4 NC_004902.1 + 36849 0.73 0.162125
Target:  5'- cUCUGCCaGCAacucUUCCGCCAuCCAAGCc -3'
miRNA:   3'- aGGGCGGaCGU----GAGGCGGUuGGUUCG- -5'
21862 5' -58.4 NC_004902.1 + 7854 0.8 0.055202
Target:  5'- aUCCCGCCUGauuCUCCGCCAcuggaugcauauGCCAuuuaccAGCg -3'
miRNA:   3'- -AGGGCGGACgu-GAGGCGGU------------UGGU------UCG- -5'
21862 5' -58.4 NC_004902.1 + 18042 1.11 0.000232
Target:  5'- gUCCCGCCUGCACUCCGCCAACCAAGCu -3'
miRNA:   3'- -AGGGCGGACGUGAGGCGGUUGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.