Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21863 | 5' | -51 | NC_004902.1 | + | 4214 | 0.67 | 0.801365 |
Target: 5'- gAUUGggcacaGCAGUgCUGGCACCAcCAg -3' miRNA: 3'- -UGACaua---UGUCAgGACCGUGGUuGUa -5' |
|||||||
21863 | 5' | -51 | NC_004902.1 | + | 33955 | 0.68 | 0.725295 |
Target: 5'- gGCUGUcuUGCuGUCCuUGaGCAUCGACAUg -3' miRNA: 3'- -UGACAu-AUGuCAGG-AC-CGUGGUUGUA- -5' |
|||||||
21863 | 5' | -51 | NC_004902.1 | + | 25282 | 0.7 | 0.632253 |
Target: 5'- -aUGUAUACGggccaugauGUCCUGGCggaguuugcgGCCAGCAc -3' miRNA: 3'- ugACAUAUGU---------CAGGACCG----------UGGUUGUa -5' |
|||||||
21863 | 5' | -51 | NC_004902.1 | + | 12964 | 0.75 | 0.344135 |
Target: 5'- gGCggGUAUACGGUCCUGGUGguguaaaugacCCAGCAg -3' miRNA: 3'- -UGa-CAUAUGUCAGGACCGU-----------GGUUGUa -5' |
|||||||
21863 | 5' | -51 | NC_004902.1 | + | 18634 | 1.06 | 0.002444 |
Target: 5'- cACUGUAUACAGUCCUGGCACCAACAUg -3' miRNA: 3'- -UGACAUAUGUCAGGACCGUGGUUGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home