miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21864	3'	-52.1	NC_004902.1	+	1767	0.67	0.741628
	Target:  5'- uGGGAAuaugGGaGGCGGGAuuagugacaauCCCUGCUc -3' miRNA:   3'- uUUCUUua--CC-CCGUCCUuu---------GGGACGG- -5'
21864	3'	-52.1	NC_004902.1	+	4472	0.67	0.698864
	Target:  5'- aAGAGAGAUugaGGGGCugcccaagcuAGGAgguAAUgCUGCCg -3' miRNA:   3'- -UUUCUUUA---CCCCG----------UCCU---UUGgGACGG- -5'
21864	3'	-52.1	NC_004902.1	+	8335	0.68	0.687408
	Target:  5'- --cGucGUGGGuGCuGGuucGACCCUGCUg -3' miRNA:   3'- uuuCuuUACCC-CGuCCu--UUGGGACGG- -5'
21864	3'	-52.1	NC_004902.1	+	6564	0.68	0.675891
	Target:  5'- uAAGGGA-GGGGCuGGGAAACUg-GCCc -3' miRNA:   3'- uUUCUUUaCCCCG-UCCUUUGGgaCGG- -5'
21864	3'	-52.1	NC_004902.1	+	7914	0.68	0.641116
	Target:  5'- cGGAGAAuca-GGCGGGAuaucugcguacACCCUGCCa -3' miRNA:   3'- -UUUCUUuaccCCGUCCUu----------UGGGACGG- -5'
21864	3'	-52.1	NC_004902.1	+	19265	0.76	0.244551
	Target:  5'- -------cGGGGCAGGGuuUCCUGCCc -3' miRNA:   3'- uuucuuuaCCCCGUCCUuuGGGACGG- -5'
21864	3'	-52.1	NC_004902.1	+	19338	1.09	0.00126
	Target:  5'- cAAAGAAAUGGGGCAGGAAACCCUGCCc -3' miRNA:   3'- -UUUCUUUACCCCGUCCUUUGGGACGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home