Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21864 | 3' | -52.1 | NC_004902.1 | + | 4472 | 0.67 | 0.698864 |
Target: 5'- aAGAGAGAUugaGGGGCugcccaagcuAGGAgguAAUgCUGCCg -3' miRNA: 3'- -UUUCUUUA---CCCCG----------UCCU---UUGgGACGG- -5' |
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21864 | 3' | -52.1 | NC_004902.1 | + | 1767 | 0.67 | 0.741628 |
Target: 5'- uGGGAAuaugGGaGGCGGGAuuagugacaauCCCUGCUc -3' miRNA: 3'- uUUCUUua--CC-CCGUCCUuu---------GGGACGG- -5' |
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21864 | 3' | -52.1 | NC_004902.1 | + | 6564 | 0.68 | 0.675891 |
Target: 5'- uAAGGGA-GGGGCuGGGAAACUg-GCCc -3' miRNA: 3'- uUUCUUUaCCCCG-UCCUUUGGgaCGG- -5' |
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21864 | 3' | -52.1 | NC_004902.1 | + | 8335 | 0.68 | 0.687408 |
Target: 5'- --cGucGUGGGuGCuGGuucGACCCUGCUg -3' miRNA: 3'- uuuCuuUACCC-CGuCCu--UUGGGACGG- -5' |
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21864 | 3' | -52.1 | NC_004902.1 | + | 7914 | 0.68 | 0.641116 |
Target: 5'- cGGAGAAuca-GGCGGGAuaucugcguacACCCUGCCa -3' miRNA: 3'- -UUUCUUuaccCCGUCCUu----------UGGGACGG- -5' |
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21864 | 3' | -52.1 | NC_004902.1 | + | 19265 | 0.76 | 0.244551 |
Target: 5'- -------cGGGGCAGGGuuUCCUGCCc -3' miRNA: 3'- uuucuuuaCCCCGUCCUuuGGGACGG- -5' |
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21864 | 3' | -52.1 | NC_004902.1 | + | 19338 | 1.09 | 0.00126 |
Target: 5'- cAAAGAAAUGGGGCAGGAAACCCUGCCc -3' miRNA: 3'- -UUUCUUUACCCCGUCCUUUGGGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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