miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21864 5' -46.8 NC_004902.1 + 23701 0.66 0.985176
Target:  5'- -gAGCUAAGccuuaaugGCCUAGCcCcuCCCu -3'
miRNA:   3'- agUCGAUUCaaa-----UGGAUCGaGuuGGG- -5'
21864 5' -46.8 NC_004902.1 + 10866 0.66 0.980675
Target:  5'- -gAGCUGAGgcUUACCUGGUgcugCAAUugaCCg -3'
miRNA:   3'- agUCGAUUCa-AAUGGAUCGa---GUUG---GG- -5'
21864 5' -46.8 NC_004902.1 + 535 0.66 0.978073
Target:  5'- uUCAGCUGAuucgGgCUGGCgUCAacuucGCCCa -3'
miRNA:   3'- -AGUCGAUUcaaaUgGAUCG-AGU-----UGGG- -5'
21864 5' -46.8 NC_004902.1 + 35404 0.67 0.972111
Target:  5'- cUCGGCguacAAGUcgGCCUagucugugaGGCUUGGCCUc -3'
miRNA:   3'- -AGUCGa---UUCAaaUGGA---------UCGAGUUGGG- -5'
21864 5' -46.8 NC_004902.1 + 44074 0.67 0.956842
Target:  5'- aUAGCUGAGgucagcgggUACC-AGCUUcuuGCCCc -3'
miRNA:   3'- aGUCGAUUCaa-------AUGGaUCGAGu--UGGG- -5'
21864 5' -46.8 NC_004902.1 + 43595 0.67 0.955954
Target:  5'- gCuGCUAAGgagaaguaucACC-AGUUCAACCCg -3'
miRNA:   3'- aGuCGAUUCaaa-------UGGaUCGAGUUGGG- -5'
21864 5' -46.8 NC_004902.1 + 8331 0.69 0.930833
Target:  5'- cCAGCgucgUGGGUg---CUGGUUCGACCCu -3'
miRNA:   3'- aGUCG----AUUCAaaugGAUCGAGUUGGG- -5'
21864 5' -46.8 NC_004902.1 + 14604 0.69 0.924661
Target:  5'- aCAGCU---UUUGCCUGGC-CAAUCg -3'
miRNA:   3'- aGUCGAuucAAAUGGAUCGaGUUGGg -5'
21864 5' -46.8 NC_004902.1 + 23768 0.69 0.924661
Target:  5'- -gGGCUAGGccauuaagGCUUAGCUCccuCCCg -3'
miRNA:   3'- agUCGAUUCaaa-----UGGAUCGAGuu-GGG- -5'
21864 5' -46.8 NC_004902.1 + 27364 0.7 0.896725
Target:  5'- aCGGCUuuGGUaaagGCCgcGCaUCAACCCg -3'
miRNA:   3'- aGUCGAu-UCAaa--UGGauCG-AGUUGGG- -5'
21864 5' -46.8 NC_004902.1 + 30526 0.71 0.836039
Target:  5'- -gGGUUAAGacgUGCCUGGgcCUCAAUCCa -3'
miRNA:   3'- agUCGAUUCaa-AUGGAUC--GAGUUGGG- -5'
21864 5' -46.8 NC_004902.1 + 8520 0.73 0.71758
Target:  5'- gUCAGCUGAGUguucccACCaccaUCAGCCCg -3'
miRNA:   3'- -AGUCGAUUCAaa----UGGaucgAGUUGGG- -5'
21864 5' -46.8 NC_004902.1 + 19303 1.14 0.002453
Target:  5'- gUCAGCUAAGUUUACCUAGCUCAACCCu -3'
miRNA:   3'- -AGUCGAUUCAAAUGGAUCGAGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.