Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21865 | 3' | -57.5 | NC_004902.1 | + | 36604 | 0.74 | 0.176664 |
Target: 5'- gCUACUGCCAcGCCGCcuuguuuguagGCCuucGcgCUGCCg -3' miRNA: 3'- -GGUGACGGU-CGGCG-----------UGGu--CuaGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 36553 | 0.66 | 0.537991 |
Target: 5'- gCAgUGCCgccagcAGCCGguUCAGAcUgUGCCg -3' miRNA: 3'- gGUgACGG------UCGGCguGGUCU-AgACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 34753 | 0.66 | 0.537991 |
Target: 5'- aCAgUGCCuGCUGCaaguaaacauucGCCAGcgugcCUGCCa -3' miRNA: 3'- gGUgACGGuCGGCG------------UGGUCua---GACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 33453 | 0.66 | 0.527331 |
Target: 5'- cCCACUGCauccaGGCa--GCguGGUUUGCCu -3' miRNA: 3'- -GGUGACGg----UCGgcgUGguCUAGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 41736 | 0.66 | 0.516751 |
Target: 5'- cCCACUGCUAgGCCaaacaggaaaaGUcCgGGGUCUGUCa -3' miRNA: 3'- -GGUGACGGU-CGG-----------CGuGgUCUAGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 908 | 0.66 | 0.516751 |
Target: 5'- cCCACcGCCuggcgugguuGCUGCACacaGGGUCaugGCCu -3' miRNA: 3'- -GGUGaCGGu---------CGGCGUGg--UCUAGa--CGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 32218 | 0.66 | 0.495856 |
Target: 5'- gCAUauCCAGCCcuGCGCgaAGAUCUGCUa -3' miRNA: 3'- gGUGacGGUCGG--CGUGg-UCUAGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 34888 | 0.68 | 0.426054 |
Target: 5'- gCCAgguCUGCCAG--GCAuCCAGGUCUGUg -3' miRNA: 3'- -GGU---GACGGUCggCGU-GGUCUAGACGg -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 29667 | 0.68 | 0.416563 |
Target: 5'- uUugUGCCAGCCGaguaACCA--UCUGUUc -3' miRNA: 3'- gGugACGGUCGGCg---UGGUcuAGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 42720 | 0.68 | 0.388882 |
Target: 5'- aCCAg-GCCGGCacCGUACCAaacuGGUCUGCg -3' miRNA: 3'- -GGUgaCGGUCG--GCGUGGU----CUAGACGg -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 30975 | 0.74 | 0.176664 |
Target: 5'- uCCACgucGCCAagaaauGCUGCACCAagGAauUCUGCCa -3' miRNA: 3'- -GGUGa--CGGU------CGGCGUGGU--CU--AGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 33990 | 0.73 | 0.186497 |
Target: 5'- gCGCUGCCAagcccucacccGCUGCGCU-GAUCUGCg -3' miRNA: 3'- gGUGACGGU-----------CGGCGUGGuCUAGACGg -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 25191 | 0.7 | 0.304961 |
Target: 5'- aCCAgUGCUGGCCGCaaacuccGCCAGGacaUCaugGCCc -3' miRNA: 3'- -GGUgACGGUCGGCG-------UGGUCU---AGa--CGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 27131 | 0.7 | 0.313389 |
Target: 5'- aCCAaUGCCuGCCGUAUUacaAGGUgUGCCa -3' miRNA: 3'- -GGUgACGGuCGGCGUGG---UCUAgACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 16271 | 0.7 | 0.324368 |
Target: 5'- aCCACUGCCaAGCaUGCAgCAGAgauggcacguuaccaUCUcgGCCa -3' miRNA: 3'- -GGUGACGG-UCG-GCGUgGUCU---------------AGA--CGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 4646 | 0.69 | 0.353901 |
Target: 5'- -aGCaUGCCuGCUGCACCAGAgggCagGCUg -3' miRNA: 3'- ggUG-ACGGuCGGCGUGGUCUa--Ga-CGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 11326 | 0.66 | 0.548724 |
Target: 5'- aCCAUUuuaGCgCAGCCuCGCCGGccauguccAUCUGCUg -3' miRNA: 3'- -GGUGA---CG-GUCGGcGUGGUC--------UAGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 19430 | 0.72 | 0.224783 |
Target: 5'- -aGCUGCCAGgauCCGCGgCAG-UCUGUCa -3' miRNA: 3'- ggUGACGGUC---GGCGUgGUCuAGACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 23842 | 0.72 | 0.249532 |
Target: 5'- aUACU-UCAGCCGCAUgGGAUucCUGCCg -3' miRNA: 3'- gGUGAcGGUCGGCGUGgUCUA--GACGG- -5' |
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21865 | 3' | -57.5 | NC_004902.1 | + | 24410 | 0.71 | 0.268851 |
Target: 5'- gCGCUGUCGGCCuuggcggcacgcuGCGCCuug-CUGCCa -3' miRNA: 3'- gGUGACGGUCGG-------------CGUGGucuaGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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