Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21866 | 5' | -56 | NC_004902.1 | + | 5735 | 0.66 | 0.572958 |
Target: 5'- -aUGCUGCCGGCuCUGcuGGUGCa----- -3' miRNA: 3'- gaACGACGGUCG-GAC--UCACGagucag -5' |
|||||||
21866 | 5' | -56 | NC_004902.1 | + | 17742 | 0.66 | 0.572958 |
Target: 5'- aUUGCUGCCuGUCUGucaAGcUGCUCAu-- -3' miRNA: 3'- gAACGACGGuCGGAC---UC-ACGAGUcag -5' |
|||||||
21866 | 5' | -56 | NC_004902.1 | + | 21367 | 0.66 | 0.539501 |
Target: 5'- -cUGCUGCgCcGCCUGuAGUGC-CGcGUCu -3' miRNA: 3'- gaACGACG-GuCGGAC-UCACGaGU-CAG- -5' |
|||||||
21866 | 5' | -56 | NC_004902.1 | + | 6804 | 0.68 | 0.41429 |
Target: 5'- --aGCaUGUCAGCCUGAGUGUcguacaauuugCGGUUg -3' miRNA: 3'- gaaCG-ACGGUCGGACUCACGa----------GUCAG- -5' |
|||||||
21866 | 5' | -56 | NC_004902.1 | + | 1776 | 0.7 | 0.332963 |
Target: 5'- gUUGCUgGUCAGCCaacauauggUGAGUGCUCAc-- -3' miRNA: 3'- gAACGA-CGGUCGG---------ACUCACGAGUcag -5' |
|||||||
21866 | 5' | -56 | NC_004902.1 | + | 24382 | 1.09 | 0.000491 |
Target: 5'- cCUUGCUGCCAGCCUGAGUGCUCAGUCc -3' miRNA: 3'- -GAACGACGGUCGGACUCACGAGUCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home