miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21867 3' -51.6 NC_004902.1 + 31328 0.66 0.812775
Target:  5'- aGGCAGGUCgCGGu--GUACGuCUGCg- -3'
miRNA:   3'- -UCGUCUAGgGUUuuuCGUGC-GACGac -5'
21867 3' -51.6 NC_004902.1 + 179 0.66 0.802689
Target:  5'- uGUAGcgCCCGAAgcAAGCGaauCUGCUGu -3'
miRNA:   3'- uCGUCuaGGGUUU--UUCGUgc-GACGAC- -5'
21867 3' -51.6 NC_004902.1 + 10710 0.66 0.781924
Target:  5'- aAGCAGAUCgauauucgcgaCCGccucAGCAaGCUGCUGa -3'
miRNA:   3'- -UCGUCUAG-----------GGUuuu-UCGUgCGACGAC- -5'
21867 3' -51.6 NC_004902.1 + 33877 0.68 0.704428
Target:  5'- uGgGGAUaCCCAAGAAGCGCGaguuagGCUu -3'
miRNA:   3'- uCgUCUA-GGGUUUUUCGUGCga----CGAc -5'
21867 3' -51.6 NC_004902.1 + 5549 0.68 0.704428
Target:  5'- uGCAGGcugCCCGcc-AGCGCGUUGCa- -3'
miRNA:   3'- uCGUCUa--GGGUuuuUCGUGCGACGac -5'
21867 3' -51.6 NC_004902.1 + 19370 0.68 0.658082
Target:  5'- cGCGGAUCCUu---GGCAgcuuUGUUGCUGc -3'
miRNA:   3'- uCGUCUAGGGuuuuUCGU----GCGACGAC- -5'
21867 3' -51.6 NC_004902.1 + 12350 0.7 0.541921
Target:  5'- aGGCAGAcgcCgCCGAGAAGCGUGCaGCUGg -3'
miRNA:   3'- -UCGUCUa--G-GGUUUUUCGUGCGaCGAC- -5'
21867 3' -51.6 NC_004902.1 + 7721 0.7 0.539646
Target:  5'- uGCAGAUCCCGGAcauugccaaagcggcGGGCGCaaagaaauaugcagaGCUGCa- -3'
miRNA:   3'- uCGUCUAGGGUUU---------------UUCGUG---------------CGACGac -5'
21867 3' -51.6 NC_004902.1 + 23260 0.72 0.474278
Target:  5'- uGCAGGUUacaauggCUAGGAAGCAUGCUGCc- -3'
miRNA:   3'- uCGUCUAG-------GGUUUUUCGUGCGACGac -5'
21867 3' -51.6 NC_004902.1 + 12559 0.72 0.464649
Target:  5'- aGGCAaaucGAUCCCGAAGcAGCA-GCUGCa- -3'
miRNA:   3'- -UCGU----CUAGGGUUUU-UCGUgCGACGac -5'
21867 3' -51.6 NC_004902.1 + 38471 0.87 0.052493
Target:  5'- gAGCAGAggagCCCAAGcagGGGCAUGCUGCUGu -3'
miRNA:   3'- -UCGUCUa---GGGUUU---UUCGUGCGACGAC- -5'
21867 3' -51.6 NC_004902.1 + 25478 1.1 0.001262
Target:  5'- uAGCAGAUCCCAAAAAGCACGCUGCUGg -3'
miRNA:   3'- -UCGUCUAGGGUUUUUCGUGCGACGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.