Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21867 | 3' | -51.6 | NC_004902.1 | + | 25478 | 1.1 | 0.001262 |
Target: 5'- uAGCAGAUCCCAAAAAGCACGCUGCUGg -3' miRNA: 3'- -UCGUCUAGGGUUUUUCGUGCGACGAC- -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 38471 | 0.87 | 0.052493 |
Target: 5'- gAGCAGAggagCCCAAGcagGGGCAUGCUGCUGu -3' miRNA: 3'- -UCGUCUa---GGGUUU---UUCGUGCGACGAC- -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 12559 | 0.72 | 0.464649 |
Target: 5'- aGGCAaaucGAUCCCGAAGcAGCA-GCUGCa- -3' miRNA: 3'- -UCGU----CUAGGGUUUU-UCGUgCGACGac -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 23260 | 0.72 | 0.474278 |
Target: 5'- uGCAGGUUacaauggCUAGGAAGCAUGCUGCc- -3' miRNA: 3'- uCGUCUAG-------GGUUUUUCGUGCGACGac -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 7721 | 0.7 | 0.539646 |
Target: 5'- uGCAGAUCCCGGAcauugccaaagcggcGGGCGCaaagaaauaugcagaGCUGCa- -3' miRNA: 3'- uCGUCUAGGGUUU---------------UUCGUG---------------CGACGac -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 12350 | 0.7 | 0.541921 |
Target: 5'- aGGCAGAcgcCgCCGAGAAGCGUGCaGCUGg -3' miRNA: 3'- -UCGUCUa--G-GGUUUUUCGUGCGaCGAC- -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 19370 | 0.68 | 0.658082 |
Target: 5'- cGCGGAUCCUu---GGCAgcuuUGUUGCUGc -3' miRNA: 3'- uCGUCUAGGGuuuuUCGU----GCGACGAC- -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 33877 | 0.68 | 0.704428 |
Target: 5'- uGgGGAUaCCCAAGAAGCGCGaguuagGCUu -3' miRNA: 3'- uCgUCUA-GGGUUUUUCGUGCga----CGAc -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 5549 | 0.68 | 0.704428 |
Target: 5'- uGCAGGcugCCCGcc-AGCGCGUUGCa- -3' miRNA: 3'- uCGUCUa--GGGUuuuUCGUGCGACGac -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 10710 | 0.66 | 0.781924 |
Target: 5'- aAGCAGAUCgauauucgcgaCCGccucAGCAaGCUGCUGa -3' miRNA: 3'- -UCGUCUAG-----------GGUuuu-UCGUgCGACGAC- -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 179 | 0.66 | 0.802689 |
Target: 5'- uGUAGcgCCCGAAgcAAGCGaauCUGCUGu -3' miRNA: 3'- uCGUCuaGGGUUU--UUCGUgc-GACGAC- -5' |
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21867 | 3' | -51.6 | NC_004902.1 | + | 31328 | 0.66 | 0.812775 |
Target: 5'- aGGCAGGUCgCGGu--GUACGuCUGCg- -3' miRNA: 3'- -UCGUCUAGgGUUuuuCGUGC-GACGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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