miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21873 5' -56 NC_004902.1 + 11261 0.66 0.574941
Target:  5'- aGCUgggCCAGCAccuccACUGCUuuGCCGg -3'
miRNA:   3'- aCGGaagGGUUGU-----UGACGAggCGGUa -5'
21873 5' -56 NC_004902.1 + 6117 0.66 0.562605
Target:  5'- gGUCUgaUCCC-GCAggcuaccaccuauGCUGCUCCGaCCAc -3'
miRNA:   3'- aCGGA--AGGGuUGU-------------UGACGAGGC-GGUa -5'
21873 5' -56 NC_004902.1 + 33044 0.67 0.487293
Target:  5'- aGCUUagCCAACAGCUGCUggcguaucuccUCGCCc- -3'
miRNA:   3'- aCGGAagGGUUGUUGACGA-----------GGCGGua -5'
21873 5' -56 NC_004902.1 + 36843 0.67 0.466337
Target:  5'- gGCUUccucUgCCAGCAACUcUUCCGCCAUc -3'
miRNA:   3'- aCGGA----AgGGUUGUUGAcGAGGCGGUA- -5'
21873 5' -56 NC_004902.1 + 31343 0.68 0.456035
Target:  5'- aGCCUUCgCAAU--CUuCUCCGCCAg -3'
miRNA:   3'- aCGGAAGgGUUGuuGAcGAGGCGGUa -5'
21873 5' -56 NC_004902.1 + 13137 0.68 0.456035
Target:  5'- uUGCCUUgacgcauagcCUCAACAGCaGCaacgCCGCCAg -3'
miRNA:   3'- -ACGGAA----------GGGUUGUUGaCGa---GGCGGUa -5'
21873 5' -56 NC_004902.1 + 12125 0.68 0.435807
Target:  5'- cGCCUUCUUAGCGucCUGCgccUCUGCCu- -3'
miRNA:   3'- aCGGAAGGGUUGUu-GACG---AGGCGGua -5'
21873 5' -56 NC_004902.1 + 36914 0.68 0.426875
Target:  5'- aUGCCUcuuuuugaaaccuagCuCCAGCAGCaGCUCCGCUg- -3'
miRNA:   3'- -ACGGAa--------------G-GGUUGUUGaCGAGGCGGua -5'
21873 5' -56 NC_004902.1 + 11996 0.71 0.294604
Target:  5'- aGCCUUgUCGAUAGCaGCUCUGUCAg -3'
miRNA:   3'- aCGGAAgGGUUGUUGaCGAGGCGGUa -5'
21873 5' -56 NC_004902.1 + 3263 0.72 0.245029
Target:  5'- aGCCUUUCCGGCGGCUGcCUUggUGCUAUa -3'
miRNA:   3'- aCGGAAGGGUUGUUGAC-GAG--GCGGUA- -5'
21873 5' -56 NC_004902.1 + 585 1.05 0.000921
Target:  5'- cUGCCUUCCCAACAACUGCUCCGCCAUc -3'
miRNA:   3'- -ACGGAAGGGUUGUUGACGAGGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.