Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21879 | 3' | -50 | NC_004902.1 | + | 13828 | 0.66 | 0.880934 |
Target: 5'- -cGGCAAGu--AUGCAGCagauauuuccagaaCCUGCAAu -3' miRNA: 3'- gcUCGUUCuuuUACGUCG--------------GGACGUUu -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 40840 | 0.66 | 0.875101 |
Target: 5'- gCGuGCAGGu-AAUGCAGCCagauCUGCu-- -3' miRNA: 3'- -GCuCGUUCuuUUACGUCGG----GACGuuu -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 29380 | 0.66 | 0.865644 |
Target: 5'- -cAGCAAGAccugcacaaaauuGGAU-CAGCCUUGCAAAc -3' miRNA: 3'- gcUCGUUCU-------------UUUAcGUCGGGACGUUU- -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 18865 | 0.67 | 0.829412 |
Target: 5'- -aGGC-AGAcgcAAGUGCAguaaguGCCCUGCAAAc -3' miRNA: 3'- gcUCGuUCU---UUUACGU------CGGGACGUUU- -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 34880 | 0.67 | 0.809347 |
Target: 5'- gGGGCGcuuguGAAAGgccuugGCGGUCCUGUAGAc -3' miRNA: 3'- gCUCGUu----CUUUUa-----CGUCGGGACGUUU- -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 1559 | 0.68 | 0.788408 |
Target: 5'- uCGAGC-AGAug--GCuGCCCgUGCAGAg -3' miRNA: 3'- -GCUCGuUCUuuuaCGuCGGG-ACGUUU- -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 13088 | 0.68 | 0.777643 |
Target: 5'- -aGGCAAGAAGggcuAUGCAGCCg-GCGGu -3' miRNA: 3'- gcUCGUUCUUU----UACGUCGGgaCGUUu -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 7747 | 0.69 | 0.732957 |
Target: 5'- gCGGGCGcaaAGAAAuAUGCAGagCUGCAAAg -3' miRNA: 3'- -GCUCGU---UCUUU-UACGUCggGACGUUU- -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 23300 | 0.7 | 0.662643 |
Target: 5'- gGAGCAGGuguAUGCAGUCaCcGCAGAu -3' miRNA: 3'- gCUCGUUCuuuUACGUCGG-GaCGUUU- -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 22092 | 0.7 | 0.626843 |
Target: 5'- --cGCAcGAGAugcGUGCAGCaCCUGCGAu -3' miRNA: 3'- gcuCGUuCUUU---UACGUCG-GGACGUUu -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 34352 | 0.8 | 0.181394 |
Target: 5'- aCGAGCAAG-GAGUGCuagaaacGGCCCUGCAc- -3' miRNA: 3'- -GCUCGUUCuUUUACG-------UCGGGACGUuu -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 32669 | 0.8 | 0.176661 |
Target: 5'- aCGGGCGAGGAGGUGacucaGGCCCUuGCAAGc -3' miRNA: 3'- -GCUCGUUCUUUUACg----UCGGGA-CGUUU- -5' |
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21879 | 3' | -50 | NC_004902.1 | + | 10684 | 1.07 | 0.002423 |
Target: 5'- cCGAGCAAGAAAAUGCAGCCCUGCAAAa -3' miRNA: 3'- -GCUCGUUCUUUUACGUCGGGACGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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