miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21879 5' -54.8 NC_004902.1 + 10773 0.66 0.663733
Target:  5'- --gUCGCGAauaucgauCUGCUUUuGCAGgGCUGCa -3'
miRNA:   3'- auaAGCGCU--------GGCGGAGuCGUU-CGACG- -5'
21879 5' -54.8 NC_004902.1 + 26664 0.66 0.629624
Target:  5'- ----gGCuGCCGaCCUCAGCcaaGAGCUGg -3'
miRNA:   3'- auaagCGcUGGC-GGAGUCG---UUCGACg -5'
21879 5' -54.8 NC_004902.1 + 30118 0.66 0.618245
Target:  5'- aGUUUGUaGGCUGCCUCcguGCAGuaUGCa -3'
miRNA:   3'- aUAAGCG-CUGGCGGAGu--CGUUcgACG- -5'
21879 5' -54.8 NC_004902.1 + 8715 0.67 0.572958
Target:  5'- ----aGCGGUCGCCgUUAGgAAGCUGCc -3'
miRNA:   3'- auaagCGCUGGCGG-AGUCgUUCGACG- -5'
21879 5' -54.8 NC_004902.1 + 9255 0.67 0.561742
Target:  5'- aAUUC-CGGCCaGaCCUCAGCAGGUgguucauggaaaUGCu -3'
miRNA:   3'- aUAAGcGCUGG-C-GGAGUCGUUCG------------ACG- -5'
21879 5' -54.8 NC_004902.1 + 14823 0.68 0.495997
Target:  5'- -cUUCGgGAUUGgUUCGGCA-GCUGCu -3'
miRNA:   3'- auAAGCgCUGGCgGAGUCGUuCGACG- -5'
21879 5' -54.8 NC_004902.1 + 18920 0.68 0.495997
Target:  5'- --cUUGCGuCUGCCUUAuuuGCAauGGCUGCc -3'
miRNA:   3'- auaAGCGCuGGCGGAGU---CGU--UCGACG- -5'
21879 5' -54.8 NC_004902.1 + 10314 0.69 0.464436
Target:  5'- -uUUgGCGGCCGCacgAGCGguGGCUGCc -3'
miRNA:   3'- auAAgCGCUGGCGgagUCGU--UCGACG- -5'
21879 5' -54.8 NC_004902.1 + 31272 0.69 0.464436
Target:  5'- ---cCGCGACCuGCCUCcGguGGCUuGUa -3'
miRNA:   3'- auaaGCGCUGG-CGGAGuCguUCGA-CG- -5'
21879 5' -54.8 NC_004902.1 + 28827 0.7 0.385847
Target:  5'- -cUUCGgcgaUGACgGCCUCcGCAAGCUGg -3'
miRNA:   3'- auAAGC----GCUGgCGGAGuCGUUCGACg -5'
21879 5' -54.8 NC_004902.1 + 10720 1.1 0.000573
Target:  5'- aUAUUCGCGACCGCCUCAGCAAGCUGCu -3'
miRNA:   3'- -AUAAGCGCUGGCGGAGUCGUUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.