miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21880 3' -55.5 NC_004902.1 + 43471 0.66 0.61133
Target:  5'- uGGUgu-CCCUGgUGUag--GCUGGCa -3'
miRNA:   3'- gCCAaacGGGACgACGguaaCGACCG- -5'
21880 3' -55.5 NC_004902.1 + 4484 0.66 0.601169
Target:  5'- gGGgcUGCCCaagcuaggagguaaUGCUGCCGUauugacaguacaaagUGCUauGGUa -3'
miRNA:   3'- gCCaaACGGG--------------ACGACGGUA---------------ACGA--CCG- -5'
21880 3' -55.5 NC_004902.1 + 16352 0.66 0.588782
Target:  5'- uGGUaacgUGCCaucuCUGCUGCa--UGCUuGGCa -3'
miRNA:   3'- gCCAa---ACGG----GACGACGguaACGA-CCG- -5'
21880 3' -55.5 NC_004902.1 + 4957 0.66 0.577562
Target:  5'- uGGgcgUGCUgcauCUGCUGCuaguguCAUUGCaUGGCu -3'
miRNA:   3'- gCCaa-ACGG----GACGACG------GUAACG-ACCG- -5'
21880 3' -55.5 NC_004902.1 + 16318 0.67 0.566388
Target:  5'- uGGUgaUGCCCU-CUGCUuguauacgUGCUGGg -3'
miRNA:   3'- gCCAa-ACGGGAcGACGGua------ACGACCg -5'
21880 3' -55.5 NC_004902.1 + 29615 0.67 0.555272
Target:  5'- aGGUgUGCCau-CUGCCAgggacUGCUaGGCg -3'
miRNA:   3'- gCCAaACGGgacGACGGUa----ACGA-CCG- -5'
21880 3' -55.5 NC_004902.1 + 32539 0.67 0.54422
Target:  5'- uGGUgauccgUGCCUgUGCUGCgUAUUGCUG-Ca -3'
miRNA:   3'- gCCAa-----ACGGG-ACGACG-GUAACGACcG- -5'
21880 3' -55.5 NC_004902.1 + 25560 0.67 0.522341
Target:  5'- uGGUgcGCCUUGCuuaauUGCC--UGCUuGGCa -3'
miRNA:   3'- gCCAaaCGGGACG-----ACGGuaACGA-CCG- -5'
21880 3' -55.5 NC_004902.1 + 8347 0.69 0.428887
Target:  5'- uGGUUcGaCCCUGCUggguguugaugGCCGUcGuCUGGCg -3'
miRNA:   3'- gCCAAaC-GGGACGA-----------CGGUAaC-GACCG- -5'
21880 3' -55.5 NC_004902.1 + 16063 0.69 0.428887
Target:  5'- aGGUgcaaaucaGCCUguuaCUGCCGUUGUUGGUa -3'
miRNA:   3'- gCCAaa------CGGGac--GACGGUAACGACCG- -5'
21880 3' -55.5 NC_004902.1 + 33389 0.71 0.311485
Target:  5'- uGGgccaUGCCCUGCaacagguacucgGCCA--GCUGGCa -3'
miRNA:   3'- gCCaa--ACGGGACGa-----------CGGUaaCGACCG- -5'
21880 3' -55.5 NC_004902.1 + 11018 0.92 0.010533
Target:  5'- aCGGUUU-CCgCUGCUGCCAUUGCUGGCc -3'
miRNA:   3'- -GCCAAAcGG-GACGACGGUAACGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.