miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21880 5' -51.7 NC_004902.1 + 14913 0.66 0.857216
Target:  5'- gCGCCUGCAAcuGUccaagcucCAGCAGcuGCCg -3'
miRNA:   3'- gGCGGAUGUUucCGc-------GUCGUCuuUGG- -5'
21880 5' -51.7 NC_004902.1 + 41654 0.66 0.857216
Target:  5'- gCCGCUUAgAGcguuccAGGCGUauuAGCGGAcAUCu -3'
miRNA:   3'- -GGCGGAUgUU------UCCGCG---UCGUCUuUGG- -5'
21880 5' -51.7 NC_004902.1 + 37268 0.66 0.848441
Target:  5'- gCCGCCacCAAcGGCGUGGUaugaGGGGAUCu -3'
miRNA:   3'- -GGCGGauGUUuCCGCGUCG----UCUUUGG- -5'
21880 5' -51.7 NC_004902.1 + 28437 0.66 0.83942
Target:  5'- gUGUCgUGCAccuuGGUGCGGCcacGAGACCa -3'
miRNA:   3'- gGCGG-AUGUuu--CCGCGUCGu--CUUUGG- -5'
21880 5' -51.7 NC_004902.1 + 38478 0.66 0.83942
Target:  5'- gUGCCcggaGCAGAGGaGCccaAGCAGggGCa -3'
miRNA:   3'- gGCGGa---UGUUUCCgCG---UCGUCuuUGg -5'
21880 5' -51.7 NC_004902.1 + 1706 0.66 0.830164
Target:  5'- cCCGCCUcccauauucccaGCAcAGGCGgAGCu--GGCUa -3'
miRNA:   3'- -GGCGGA------------UGUuUCCGCgUCGucuUUGG- -5'
21880 5' -51.7 NC_004902.1 + 5440 0.66 0.830164
Target:  5'- -aGCCUGC--GGGCGUuuGguGAGcguGCCg -3'
miRNA:   3'- ggCGGAUGuuUCCGCGu-CguCUU---UGG- -5'
21880 5' -51.7 NC_004902.1 + 35741 0.66 0.816828
Target:  5'- gCCGCCUGauggcuguGGAGGCaaguCAGCAGAucacggcagagcuGCCa -3'
miRNA:   3'- -GGCGGAUg-------UUUCCGc---GUCGUCUu------------UGG- -5'
21880 5' -51.7 NC_004902.1 + 20934 0.67 0.814889
Target:  5'- -gGCa-GCAAAGGCuacauccucugacuuGCAGCAGAGAUUu -3'
miRNA:   3'- ggCGgaUGUUUCCG---------------CGUCGUCUUUGG- -5'
21880 5' -51.7 NC_004902.1 + 17598 0.67 0.810985
Target:  5'- aCGUgCUACAGcaGUGCAGCAGGuAACUa -3'
miRNA:   3'- gGCG-GAUGUUucCGCGUCGUCU-UUGG- -5'
21880 5' -51.7 NC_004902.1 + 35685 0.67 0.810985
Target:  5'- -aGCCauCAGGcGGCGCAGCAGcucauCCu -3'
miRNA:   3'- ggCGGauGUUU-CCGCGUCGUCuuu--GG- -5'
21880 5' -51.7 NC_004902.1 + 18225 0.67 0.801086
Target:  5'- aCUGCCcuggcaGCAGAGGCuCAGCAGcgcAACa -3'
miRNA:   3'- -GGCGGa-----UGUUUCCGcGUCGUCu--UUGg -5'
21880 5' -51.7 NC_004902.1 + 32073 0.67 0.790995
Target:  5'- gCGCCgu---AGGCGCGuuGGAAGCUa -3'
miRNA:   3'- gGCGGauguuUCCGCGUcgUCUUUGG- -5'
21880 5' -51.7 NC_004902.1 + 38360 0.67 0.780725
Target:  5'- aUCGCCU---GAGaGCGUuGCGGAGACg -3'
miRNA:   3'- -GGCGGAuguUUC-CGCGuCGUCUUUGg -5'
21880 5' -51.7 NC_004902.1 + 36782 0.67 0.780725
Target:  5'- uUGCCUGCAucAGGGCagagcGCAGCucaugcaccAGAuuCCg -3'
miRNA:   3'- gGCGGAUGU--UUCCG-----CGUCG---------UCUuuGG- -5'
21880 5' -51.7 NC_004902.1 + 4202 0.67 0.770289
Target:  5'- gCCGCCgaGCAugauuGGGCaCAGCAGugcuggcACCa -3'
miRNA:   3'- -GGCGGa-UGUu----UCCGcGUCGUCuu-----UGG- -5'
21880 5' -51.7 NC_004902.1 + 40057 0.67 0.767127
Target:  5'- gCCGCCUcccAgGAGGGggaguuaucaucguCGCAGguGAggUCg -3'
miRNA:   3'- -GGCGGA---UgUUUCC--------------GCGUCguCUuuGG- -5'
21880 5' -51.7 NC_004902.1 + 35287 0.68 0.756493
Target:  5'- gCUGCgUGCcu-GGCGUggagcuugguaccaAGUAGAGGCCa -3'
miRNA:   3'- -GGCGgAUGuuuCCGCG--------------UCGUCUUUGG- -5'
21880 5' -51.7 NC_004902.1 + 25332 0.68 0.753275
Target:  5'- gCUGCCacgcgaccacacugGCAAGGGUGCuGCGGGAGg- -3'
miRNA:   3'- -GGCGGa-------------UGUUUCCGCGuCGUCUUUgg -5'
21880 5' -51.7 NC_004902.1 + 7609 0.68 0.72713
Target:  5'- gCUGCCUACAAGGGCaaGGaUGGAGAa- -3'
miRNA:   3'- -GGCGGAUGUUUCCGcgUC-GUCUUUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.