miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21881 3' -59.5 NC_004902.1 + 36701 0.66 0.385179
Target:  5'- cAAC-GCCCagGGCAGCAGccacGC-CAGCa -3'
miRNA:   3'- -UUGaCGGGa-CCGUCGUCuc--CGaGUCG- -5'
21881 3' -59.5 NC_004902.1 + 1568 0.66 0.3673
Target:  5'- uGGCUGCCCgu---GCAGAGGCaaaGGCc -3'
miRNA:   3'- -UUGACGGGaccguCGUCUCCGag-UCG- -5'
21881 3' -59.5 NC_004902.1 + 24311 0.66 0.3673
Target:  5'- gGACUGagcacucaggCUGGCAGCA-AGGCgCAGCg -3'
miRNA:   3'- -UUGACgg--------GACCGUCGUcUCCGaGUCG- -5'
21881 3' -59.5 NC_004902.1 + 36993 0.67 0.316377
Target:  5'- gAGCUGCUgCUGG-AGCuagguuuccaaaaAGAGGCaUCAGCu -3'
miRNA:   3'- -UUGACGG-GACCgUCG-------------UCUCCG-AGUCG- -5'
21881 3' -59.5 NC_004902.1 + 22740 0.68 0.279463
Target:  5'- gGGCUGUCa--GCGGCGGGGGUgguggcgaUCAGCa -3'
miRNA:   3'- -UUGACGGgacCGUCGUCUCCG--------AGUCG- -5'
21881 3' -59.5 NC_004902.1 + 13367 0.68 0.265411
Target:  5'- uACUGCCaguuaCUGGUAG-AGGGGUaCAGCg -3'
miRNA:   3'- uUGACGG-----GACCGUCgUCUCCGaGUCG- -5'
21881 3' -59.5 NC_004902.1 + 40730 0.68 0.251936
Target:  5'- -cCUGCaacaCUGGCacaGGCuGAGGCUCuguuGCa -3'
miRNA:   3'- uuGACGg---GACCG---UCGuCUCCGAGu---CG- -5'
21881 3' -59.5 NC_004902.1 + 35747 0.7 0.198162
Target:  5'- uGCUGCgCCgccugaUGGCuGUGGAGGCaagUCAGCa -3'
miRNA:   3'- uUGACG-GG------ACCGuCGUCUCCG---AGUCG- -5'
21881 3' -59.5 NC_004902.1 + 34513 0.72 0.150413
Target:  5'- uGCUGUcgCCUGGCcGUAGAGGuCUCAuGCu -3'
miRNA:   3'- uUGACG--GGACCGuCGUCUCC-GAGU-CG- -5'
21881 3' -59.5 NC_004902.1 + 23245 0.72 0.149993
Target:  5'- uAGCUGUCCUGGCGguGCAGGuuacaauGGCUaggaAGCa -3'
miRNA:   3'- -UUGACGGGACCGU--CGUCU-------CCGAg---UCG- -5'
21881 3' -59.5 NC_004902.1 + 4021 0.72 0.138268
Target:  5'- gAAC-GCCCUGGCGGCcuGGGcCUCuGCu -3'
miRNA:   3'- -UUGaCGGGACCGUCGucUCC-GAGuCG- -5'
21881 3' -59.5 NC_004902.1 + 32631 0.72 0.134423
Target:  5'- uAUUGCCCUGGCA-CAGAGcccugccaCUCAGCu -3'
miRNA:   3'- uUGACGGGACCGUcGUCUCc-------GAGUCG- -5'
21881 3' -59.5 NC_004902.1 + 18223 1.09 0.000181
Target:  5'- cAACUGCCCUGGCAGCAGAGGCUCAGCa -3'
miRNA:   3'- -UUGACGGGACCGUCGUCUCCGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.