Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21885 | 5' | -60.4 | NC_004902.1 | + | 18755 | 0.66 | 0.388652 |
Target: 5'- uGUGCauCCuGGGCCguuGACAGCGUUUg -3' miRNA: 3'- gCACGgcGGuUCCGG---CUGUCGCGAGu -5' |
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21885 | 5' | -60.4 | NC_004902.1 | + | 23820 | 0.67 | 0.329773 |
Target: 5'- -cUGCCGCCGacaucggaAGGCCcuaAGCGCUUc -3' miRNA: 3'- gcACGGCGGU--------UCCGGcugUCGCGAGu -5' |
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21885 | 5' | -60.4 | NC_004902.1 | + | 28763 | 0.68 | 0.284753 |
Target: 5'- gCGgagGCCGUCAucGCCGAaguguGUGCUCAg -3' miRNA: 3'- -GCa--CGGCGGUucCGGCUgu---CGCGAGU- -5' |
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21885 | 5' | -60.4 | NC_004902.1 | + | 13044 | 0.69 | 0.22653 |
Target: 5'- ---aUUGCCAAGGCUGGCGGCGUUg- -3' miRNA: 3'- gcacGGCGGUUCCGGCUGUCGCGAgu -5' |
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21885 | 5' | -60.4 | NC_004902.1 | + | 12371 | 0.71 | 0.173993 |
Target: 5'- aCGUGCUGCacccugcgccugUAGGGCCGcGgAGCGCUCc -3' miRNA: 3'- -GCACGGCG------------GUUCCGGC-UgUCGCGAGu -5' |
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21885 | 5' | -60.4 | NC_004902.1 | + | 4198 | 0.72 | 0.152019 |
Target: 5'- gCGUGCCGCCGagcaugauuGGGCaCaGCAGUGCUg- -3' miRNA: 3'- -GCACGGCGGU---------UCCG-GcUGUCGCGAgu -5' |
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21885 | 5' | -60.4 | NC_004902.1 | + | 24343 | 1.08 | 0.000255 |
Target: 5'- gCGUGCCGCCAAGGCCGACAGCGCUCAg -3' miRNA: 3'- -GCACGGCGGUUCCGGCUGUCGCGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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